RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 LOC110117498-PIK3R3F6TDL0 507 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 ETV2O00321 342 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-208ENST00000537004 ZNF208O43345 1280 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 PRF1P14222 555 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 GBX2P52951 348 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-208ENST00000537004 OXA1LQ15070 435 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 EEF1A1P5Q5VTE0 462 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 PLXDC2Q6UX71 529 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 SLC16A9Q7RTY1 509 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 LYSMD2Q8IV50 215 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 PM20D2Q8IYS1 436 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 OR6S1Q8NH40 331 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 ZNF519Q8TB69 540 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 CA5BP1Q8WTZ4 195 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 ARL5BQ96KC2 179 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 TXNIPQ9H3M7 391 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 MARCH7Q9H992 704 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 ACOXLQ9NUZ1 547 aa10.61□□□□□ -0.71
CLIP1-208ENST00000537004 MRPL39Q9NYK5 338 aaKnown RBP10.61□□□□□ -0.71
CLIP1-208ENST00000537004 PHF3Q92576 2039 aaKnown RBP10.61□□□□□ -0.71
CLIP1-208ENST00000537004 SLC35F4A4IF30 521 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 NKX2-6A6NCS4 301 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 SHISA8B8ZZ34 492 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 OGG1O15527 345 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 NCR1O76036 304 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 CLDN14O95500 239 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 GLI4P10075 376 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 GTF2E2P29084 291 aaKnown RBP10.6□□□□□ -0.71
CLIP1-208ENST00000537004 SIRPAP78324 504 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 PLPPR5Q32ZL2 321 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 STEAP3Q658P3 488 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 PLEKHG7Q6ZR37 379 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 SEM1Q6ZVN7 128 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 PLCZ1Q86YW0 608 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 TIGD4Q8IY51 512 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 MFSD8Q8NHS3 518 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 ABHD4Q8TB40 342 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 RND1Q92730 232 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 GHSRQ92847 366 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 DDIT4LQ96D03 193 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 SMIM19Q96E16 107 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 MRGPRX4Q96LA9 322 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 ABCB9Q9NP78 766 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 RPH3AQ9Y2J0 694 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-208ENST00000537004 ISPDA4D126 451 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 PRSS37A4D1T9 235 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 TVP23AA6NH52 213 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 PRR32B1ATL7 298 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 CBR3O75828 277 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 SC5DO75845 299 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 IGHMP01871 453 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 GSTT2P0CG29 244 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 GSTT2BP0CG30 244 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 IL11P20809 199 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 S100A1P23297 94 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 MTNR1BP49286 362 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 STARP49675 285 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 GDI2P50395 445 aaKnown RBP10.6□□□□□ -0.71
CLIP1-208ENST00000537004 MFSD13AQ14CX5 517 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 CDK5R1Q15078 307 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 OR7A5Q15622 319 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 SLC25A53Q5H9E4 307 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 DDI2Q5TDH0 399 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 RPL22L1Q6P5R6 122 aaKnown RBP10.6□□□□□ -0.71
CLIP1-208ENST00000537004 CEACAM19Q7Z692 300 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 MS4A15Q8N5U1 240 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 MINDY2Q8NBR6 621 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 OR2M3Q8NG83 312 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 OR14L1PQ8NHC6 308 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 PPIL3Q9H2H8 161 aaKnown RBP10.6□□□□□ -0.71
CLIP1-208ENST00000537004 MIXL1Q9H2W2 232 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 COQ3Q9NZJ6 369 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 UGT2A1Q9Y4X1 527 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 KLF2Q9Y5W3 355 aaPredicted RBP10.6□□□□□ -0.71
CLIP1-208ENST00000537004 V9GYH0 126 aa10.6□□□□□ -0.71
CLIP1-208ENST00000537004 A0A0G2JNJ9 132 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 A0A1W2PRG6 482 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 FAM90A27PA6NNH2 459 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 H3BML4 177 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 EFNA2O43921 213 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 TOXO94900 526 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 TFPIP10646 304 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 AGAP20933 346 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 PSMB10P40306 273 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 MAP2K6P52564 334 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 PUDPQ08623 228 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 CCDC58Q4VC31 144 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 ZNF684Q5T5D7 378 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 FAM27D1Q5T7N8 215 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 PXKQ7Z7A4 578 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 CDC20BQ86Y33 519 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 LIX1LQ8IVB5 337 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 OR13C5Q8NGS8 318 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 MARVELD3Q96A59 401 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 SNX18Q96RF0 628 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 SDHCQ99643 169 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-208ENST00000537004 POLE4Q9NR33 117 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 Q9UFV3 132 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 CAMK2AQ9UQM7 478 aa10.59□□□□□ -0.71
CLIP1-208ENST00000537004 KLHDC2Q9Y2U9 406 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms