RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CMIPQ8IY22 773 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 GABRG1Q8N1C3 465 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 LRRC75A-AS1Q8N1F1 130 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ZNF619Q8N2I2 560 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 LRRC17Q8N6Y2 441 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ZNF614Q8N883 585 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 STEAP2Q8NFT2 490 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 CNIH3Q8TBE1 160 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 SLC25A43Q8WUT9 341 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ROBO4Q8WZ75 1007 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 RAB8BQ92930 207 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 PTP4A1Q93096 173 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ZNF524Q96C55 264 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ZG16BQ96DA0 208 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 TEX37Q96LM6 180 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 SDHCQ99643 169 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-207ENST00000507401 SLC35A5Q9BS91 424 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 BCO1Q9HAY6 547 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-207ENST00000507401 KLHL9Q9P2J3 617 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 CLEC4AQ9UMR7 237 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 HSPB11Q9Y547 144 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 MAB21L2Q9Y586 359 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 SPIN1Q9Y657 262 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-207ENST00000507401 V9GYH0 126 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 NIPBLQ6KC79 2804 aaeCLIP7.1□□□□□ -1.27
SCN1A-207ENST00000507401 A0A0X1KG70 313 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 FAM240BA0A1B0GVZ2 78 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 A0A1W2PQ09 198 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 PRAMEF27A3QJZ7 478 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 ZNF724A8MTY0 619 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 I3L521 148 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 FAAHO00519 579 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 RFXANKO14593 260 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 KLF4O43474 513 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 DNPH1O43598 174 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 PRKYO43930 277 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 CYTIPO60759 359 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 DBIP07108 87 aaKnown RBP7.1□□□□□ -1.27
SCN1A-207ENST00000507401 THBDP07204 575 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 LOXP28300 417 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-207ENST00000507401 FMO3P31513 532 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 CCKARP32238 428 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 CASP9P55211 416 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 CDC42P60953 191 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 CSNK2A1P68400 391 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-207ENST00000507401 GNA13Q14344 377 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 POU4F3Q15319 338 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 CARTPTQ16568 116 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 BAK1Q16611 211 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 TATDN3Q17R31 274 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 EXOC3L2Q2M3D2 409 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 NDUFAF6Q330K2 333 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 SFRP5Q5T4F7 317 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 SHEQ5VZ18 495 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 GPR139Q6DWJ6 353 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 MZT2AQ6P582 158 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 TNFAIP8L2Q6P589 184 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-207ENST00000507401 FRRS1Q6ZNA5 592 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 TMPPEQ6ZT21 453 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 C22orf34Q6ZV56 151 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 AHSA2Q719I0 299 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 GRINAQ7Z429 371 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 TUSC5Q8IXB3 177 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 LINC00518Q8N0U6 118 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 ATG16L2Q8NAA4 619 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 ZNF680Q8NEM1 530 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 ATP6V1C2Q8NEY4 427 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 OR8H1Q8NGG4 311 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 ABHD3Q8WU67 409 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 ACOT12Q8WYK0 555 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 HSD17B8Q92506 261 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 SGCDQ92629 289 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 SLC25A46Q96AG3 418 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 SGTBQ96EQ0 304 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 PIK3IP1Q96FE7 263 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 ITCHQ96J02 903 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 DMRTB1Q96MA1 342 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 C7orf50Q9BRJ6 194 aaKnown RBP7.1□□□□□ -1.27
SCN1A-207ENST00000507401 TAPBPLQ9BX59 468 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 SRXN1Q9BYN0 137 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 ACTR6Q9GZN1 396 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 FN3KQ9H479 309 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 THUMPD1Q9NXG2 353 aaKnown RBP7.1□□□□□ -1.27
SCN1A-207ENST00000507401 CYB5R1Q9UHQ9 305 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 ING1Q9UK53 422 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-207ENST00000507401 SSR3Q9UNL2 185 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 PRELID3BQ9Y3B1 194 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 HDGFL3Q9Y3E1 203 aa7.1□□□□□ -1.27
SCN1A-207ENST00000507401 NF1P21359 2839 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 IGKV3D-15A0A087WSY6 115 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 TRBV5-3A0A0A0MS03 114 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 LOC100506127A0A0U1RQW1 187 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 CENPVL1A0A0U1RR11 272 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 FABP12A6NFH5 140 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 ATP6V1G2-DDX39BF2Z307 99 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 SULT2B1O00204 365 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 ABCD4O14678 606 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 EREGO14944 169 aa7.09□□□□□ -1.27
SCN1A-207ENST00000507401 SMAD9O15198 467 aaKnown RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms