RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TRAV18A0A075B6X5 111 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 IGLV1-36A0A0B4J1U3 117 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PRSS37A4D1T9 235 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TLCD2A6NGC4 264 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 L7N2F9 121 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RAD1O60671 282 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CSF1P09603 554 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CCKBRP32239 447 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 FAUP35544 74 aaKnown RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 DHPSP49366 369 aaPredicted RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 EBPQ15125 230 aaKnown RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ACKR1Q16570 336 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 C9orf40Q8IXQ3 194 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ZNF679Q8IYX0 411 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 LMX1AQ8TE12 382 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 FAM3DQ96BQ1 224 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 C8orf44Q96CB5 159 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC25A36Q96CQ1 311 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 NKX3-1Q99801 234 aaPredicted RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PRMT8Q9NR22 394 aaPredicted RBP14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RP1P56715 2156 aa14.47□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ZNF98A6NK75 572 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC17A2O00624 439 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 XKRYO14609 159 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CDC40O60508 579 aaKnown RBP eCLIP14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ZNF217O75362 1048 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 WNT11O96014 354 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 H2BFSP57053 126 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RAB14P61106 215 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RPL27P61353 136 aaKnown RBP14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ELOCQ15369 112 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ETFDHQ16134 617 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SGCBQ16585 318 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 C3P1Q6ZMU1 363 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MAMDC2Q7Z304 686 aaPredicted RBP14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 C17orf82Q86X59 251 aaPredicted RBP14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR5M1Q8NGP8 315 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 METTL21AQ8WXB1 218 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC25A28Q96A46 364 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PNPLA2Q96AD5 504 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CHRNA10Q9GZZ6 450 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TAS2R8Q9NYW2 309 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SEC16AO15027 2179 aa14.46□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TMEM272A0A1B0GTI8 110 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MEIS3P1A6NDR6 274 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TUBAL3A6NHL2 446 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ALG1L2C9J202 215 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SUSD5O60279 629 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 NPIPB7O75200 414 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RGS11O94810 467 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SIX6O95475 246 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 HLA-DQA2P01906 255 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 NR0B1P51843 470 aaKnown RBP14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DLX5P56178 289 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ROM1Q03395 351 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MFGE8Q08431 387 aaPredicted RBP14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RAB11BQ15907 218 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FIP1L1Q6UN15 594 aaKnown RBP14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR6N1Q8NGY5 312 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ASB17Q8WXJ9 295 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 VSX1Q9NZR4 365 aaPredicted RBP14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OPN4Q9UHM6 478 aa14.46□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 LOC100289279A0A1B0GTE1 492 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQD3 144 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TTLL8A6PVC2 850 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 EIF4E2O60573 245 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SLC16A7O60669 478 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DXOO77932 396 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 NME1P15531 152 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 POU3F2P20265 443 aaPredicted RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 IL12BP29460 328 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PPM1FP49593 454 aaPredicted RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CSNK1EP49674 416 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PRAMEF17Q5VTA0 474 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FAM198BQ6UWH4 519 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CHMP1BQ7LBR1 199 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MDGA2Q7Z553 956 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GPAT4Q86UL3 456 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR51S1Q8NGJ8 323 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FBXW5Q969U6 566 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DHCR7Q9UBM7 475 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 EPHA6Q9UF33 1036 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 KIF25Q9UIL4 384 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RALGAPA1Q6GYQ0 2036 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PATE3B3GLJ2 98 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TO15178 435 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 WDPCPO95876 746 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MT-ATP6P00846 226 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SPARCP09486 303 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 AKAIN1P0CW23 69 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GTF2F2P13984 249 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CTLA4P16410 223 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 C4BPBP20851 252 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CENPAP49450 140 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 UBE2MP61081 183 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ELAVL1Q15717 326 aaKnown RBP14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SFRP5Q5T4F7 317 aa14.45□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR7E24Q6IFN5 339 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms