RNA–Protein interactions for RNA: ENST00000491592.1

RTN4-215, Transcript of reticulon 4, human

TSL 2

Gene RTN4, Length 860 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RTN4-215	ENST00000491592	SCCPDH	Q8NBX0	429 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	RNF149	Q8NC42	400 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	ACVR1C	Q8NER5	493 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	OR2D3	Q8NGH3	330 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	OR6M1	Q8NGM8	313 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	OR4A4P	Q8NGN8	299 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	WDR36	Q8NI36	951 aa	Known RBP	4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	FAM110B	Q8TC76	370 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	TWIST2	Q8WVJ9	160 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	FAM3C	Q92520	227 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	SNAPC3	Q92966	411 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	MYDGF	Q969H8	173 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	WBP2	Q969T9	261 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	S100PBP	Q96BU1	408 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	ST6GAL2	Q96JF0	529 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	RNF170	Q96K19	258 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	WFIKKN1	Q96NZ8	548 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	IL12RB2	Q99665	862 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	TBL1Y	Q9BQ87	522 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	MAP1LC3C	Q9BXW4	147 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	NPFFR1	Q9GZQ6	430 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	RACGAP1	Q9H0H5	632 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	GABARAPL1	Q9H0R8	117 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	NIPAL2	Q9H841	368 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	C3orf14	Q9HBI5	128 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	POPDC3	Q9HBV1	291 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	NOX4	Q9NPH5	578 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	ACOT13	Q9NPJ3	140 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	HINT3	Q9NQE9	182 aa	Known RBP	4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	NANS	Q9NR45	359 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	ACSS1	Q9NUB1	689 aa	Predicted RBP	4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	GNG12	Q9UBI6	72 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	EIF3K	Q9UBQ5	218 aa	Known RBP	4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	NDRG3	Q9UGV2	375 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	NUP50	Q9UKX7	468 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	PPP1R3C	Q9UQK1	317 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	BTRC	Q9Y297	605 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	TMED7	Q9Y3B3	224 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	TBL2	Q9Y4P3	447 aa	Known RBP	4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	POLR3H	Q9Y535	204 aa	Predicted RBP	4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	RAI2	Q9Y5P3	530 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	DNAJC15	Q9Y5T4	150 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	WIF1	Q9Y5W5	379 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	AUP1	Q9Y679	476 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	CDH10	Q9Y6N8	788 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	CIT	O14578	2027 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	MIA3	Q5JRA6	1907 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	DOCK1	Q14185	1865 aa		4.2	□□□□□ -1.74
RTN4-215	ENST00000491592	NUP205	Q92621	2012 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF646	O15015	1829 aa	Predicted RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ATP6AP2	A0A1C7CYW4	349 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592		A0A1W2PNV4	684 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592		A0A1W2PPE3	182 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	OR5K3	A6NET4	321 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TMEM189-UBE2V1	I3L0A0	370 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592		J3QR06	171 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592		M0R036	132 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	KCNK1	O00180	336 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	CCRL2	O00421	344 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	UBFD1	O14562	309 aa	Known RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	BET1	O15155	118 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	GMDS	O60547	372 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TSPAN2	O60636	221 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	DPM1	O60762	260 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	SH3BGRL	O75368	114 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	FARS2	O95363	451 aa	Known RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	LDOC1	O95751	146 aa	Predicted RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	EGF	P01133	1207 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	JCHAIN	P01591	159 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	CXCL8	P10145	99 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TFPI	P10646	304 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	IL7	P13232	177 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	IRF2	P14316	349 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	SPN	P16150	400 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	HLA-DMA	P28067	261 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	CD1C	P29017	333 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TGFBR2	P37173	567 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	DCT	P40126	519 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	OR3A3	P47888	321 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	NKX2-5	P52952	324 aa	Predicted RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	HMGCS2	P54868	508 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	OR4D2	P58180	307 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	TPI1	P60174	286 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	NCS1	P62166	190 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF33B	Q06732	778 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	FAM27E3	Q08E93	113 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	PLA2G7	Q13093	441 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	UBE2V1	Q13404	147 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	GPR50	Q13585	617 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	EXOSC7	Q15024	291 aa	Known RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	OR4D1	Q15615	310 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	MRPL23	Q16540	153 aa	Known RBP	4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	C2orf68	Q2NKX9	166 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF284	Q2VY69	593 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ZNF528	Q3MIS6	628 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	ESCO2	Q56NI9	601 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	LIPJ	Q5W064	366 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	OR5M10	Q6IEU7	315 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592	LAIR2	Q6ISS4	152 aa		4.19	□□□□□ -1.74
RTN4-215	ENST00000491592		Q6ZTK2	550 aa		4.19	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms