RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PRAMEF20Q5VT98 475 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 WSCD1Q658N2 575 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OLFML2AQ68BL7 652 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ACSM5Q6NUN0 579 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 LPCAT3Q6P1A2 487 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SLC27A4Q6P1M0 643 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 NPSR1Q6W5P4 371 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 Q6ZR54 194 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 Q6ZS52 159 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 Q6ZVQ6 151 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CENPUQ71F23 418 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 NDUFAF7Q7L592 441 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ARCQ7LC44 396 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SMIM15Q7Z3B0 74 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 COX8CQ7Z4L0 72 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CEACAM19Q7Z692 300 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 LHFPL3Q86UP9 236 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SLC13A5Q86YT5 568 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FBXO16Q8IX29 292 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CTAGE3PQ8IX95 158 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 UBQLNLQ8IYU4 475 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 APCDD1Q8J025 514 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SVOPLQ8N434 492 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FGFRL1Q8N441 504 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 LINC00612Q8N6U2 182 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 LRRC17Q8N6Y2 441 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 C4orf32Q8N8J7 132 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MRPL43Q8N983 215 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 EIF1ADQ8N9N8 165 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 COLGALT1Q8NBJ5 622 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CHDHQ8NE62 594 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 C19orf18Q8NEA5 215 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 BBS1Q8NFJ9 593 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OR5T1Q8NG75 326 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OR52M1Q8NGK5 317 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OR5D18Q8NGL1 313 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OR10T2Q8NGX3 314 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF420Q8TAQ5 688 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ACTL9Q8TC94 416 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CD300LFQ8TDQ1 290 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ST7LQ8TDW4 575 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ZFP90Q8TF47 636 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SFT2D1Q8WV19 159 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PCNPQ8WW12 178 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 DNAJA4Q8WW22 397 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 S100ZQ8WXG8 99 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 C22orf15Q8WYQ4 148 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OR1E3Q8WZA6 343 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RBPMSQ93062 196 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 FBXO32Q969P5 355 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 S100PBPQ96BU1 408 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SLC25A36Q96CQ1 311 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OTUB2Q96DC9 234 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MAGEB18Q96M61 343 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PACRGQ96M98 296 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 LINC00052Q96N35 136 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 AMDHD1Q96NU7 426 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CASD1Q96PB1 797 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TRNT1Q96Q11 434 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 OR5M11Q96RB7 305 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CHP1Q99653 195 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 KCNS3Q9BQ31 491 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF559Q9BR84 538 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ATG101Q9BSB4 218 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TMEM121Q9BTD3 319 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MED18Q9BUE0 208 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ROGDIQ9GZN7 287 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 NEUROG2Q9H2A3 272 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 GAL3ST2Q9H3Q3 398 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ASB8Q9H765 288 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MYOZ1Q9NP98 299 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 NT5MQ9NPB1 228 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 SIRT7Q9NRC8 400 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ABCB10Q9NRK6 738 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 AGPAT5Q9NUQ2 364 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ELOVL2Q9NXB9 296 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TREM2Q9NZC2 230 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 BFARQ9NZS9 450 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 VAPAQ9P0L0 249 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 COPZ2Q9P299 210 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MYEF2Q9P2K5 600 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 DHCR7Q9UBM7 475 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TRPC4Q9UBN4 977 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RNF14Q9UBS8 474 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CLEC2DQ9UHP7 191 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 C3orf18Q9UK00 162 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CDH9Q9ULB4 789 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 STAP1Q9ULZ2 295 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 ABCG2Q9UNQ0 655 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 BAIAP2Q9UQB8 552 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PIN4Q9Y237 131 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 TP53TG5Q9Y2B4 290 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 POFUT2Q9Y2G5 429 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 PLEKHA6Q9Y2H5 1048 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MRPS2Q9Y399 296 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 RNF11Q9Y3C5 154 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 MRPS18CQ9Y3D5 142 aaKnown RBP1.72□□□□□ -2.13
HMGB1-208ENST00000490788 AP4B1Q9Y6B7 739 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 CLCA3PQ9Y6N3 262 aa1.72□□□□□ -2.13
HMGB1-208ENST00000490788 HSPE1-MOB4S4R3N1 261 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms