RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ROM1Q03395 351 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 STEAP1BQ6NZ63 245 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 LRFN4Q6PJG9 635 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 LINC00346Q8IVM7 164 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 SLC38A6Q8IZM9 456 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.12■□□□□ 0.17
VIM-206ENST00000487938 OR2AK2Q8NG84 335 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 OR6N1Q8NGY5 312 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 PNPLA2Q96AD5 504 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 MESP1Q9BRJ9 268 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 CHRNA10Q9GZZ6 450 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 EXO5Q9H790 373 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 RDH8Q9NYR8 311 aa16.12■□□□□ 0.17
VIM-206ENST00000487938 A0A1W2PPC1 479 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 LMX1BO60663 402 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 ZNF217O75362 1048 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 HTR2CP28335 458 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 SEC61A1P61619 476 aaKnown RBP16.11■□□□□ 0.17
VIM-206ENST00000487938 FMODQ06828 376 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 SPOCK1Q08629 439 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 C4orf46Q504U0 113 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 NHLRC3Q5JS37 347 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 OR10K2Q6IF99 312 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 GRINAQ7Z429 371 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 WDFY1Q8IWB7 410 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 THAP3Q8WTV1 239 aaPredicted RBP16.11■□□□□ 0.17
VIM-206ENST00000487938 SLC25A44Q96H78 314 aaPredicted RBP16.11■□□□□ 0.17
VIM-206ENST00000487938 OPN4Q9UHM6 478 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 FXYD6-FXYD2A0A087WZ82 144 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 AHSA1O95433 338 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 C4BPBP20851 252 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 HLXQ14774 488 aaPredicted RBP16.11■□□□□ 0.17
VIM-206ENST00000487938 GLT8D1Q68CQ7 371 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 OGFOD3Q6PK18 319 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 ABCA7Q8IZY2 2146 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 CLEC1AQ8NC01 280 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 TNFAIP8L1Q8WVP5 186 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 PMEPA1Q969W9 287 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 MVB12AQ96EY5 273 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 FXYD6Q9H0Q3 95 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 CKLFQ9UBR5 152 aa16.11■□□□□ 0.17
VIM-206ENST00000487938 IGHV1OR21-1A0A087WYE8 117 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 M0QYG6 137 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 CD2P06729 351 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 CFPP27918 469 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 CSNK1EP49674 416 aaKnown RBP16.1■□□□□ 0.17
VIM-206ENST00000487938 GABRG1Q8N1C3 465 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 OR13C3Q8NGS6 347 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 OR52N5Q8NH56 324 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 GPX8Q8TED1 209 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 SEH1LQ96EE3 360 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 TMPRSS13Q9BYE2 586 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 RAB33BQ9H082 229 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 CTSFQ9UBX1 484 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 LOC101059948A0A1B0GTJ6 334 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 MS4A18H0YCH9 400 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 MAP2K6P52564 334 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 HNRNPKP61978 463 aaKnown RBP eCLIP16.1■□□□□ 0.17
VIM-206ENST00000487938 GLO1Q04760 184 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 MS4A18Q3C1V0 323 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 ALKAL2Q6UX46 152 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 TMUB2Q71RG4 321 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 TDHQ8IZJ6 230 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 JAGN1Q8N5M9 183 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 THRSPQ92748 146 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 ARL5BQ96KC2 179 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 CMKLR1Q99788 373 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 DUSP15Q9H1R2 295 aaPredicted RBP16.1■□□□□ 0.17
VIM-206ENST00000487938 POFUT1Q9H488 388 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 APMAPQ9HDC9 416 aa16.1■□□□□ 0.17
VIM-206ENST00000487938 KIF26BQ2KJY2 2108 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 POM121CA8CG34 1229 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 F5H5P2 479 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 S100A11P31949 105 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 DNASE1L1P49184 302 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 SLC26A5P58743 744 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 TMEM65Q6PI78 240 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 C11orf88Q6PI97 169 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 CORO6Q6QEF8 472 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 IDO2Q6ZQW0 420 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 DCXRQ7Z4W1 244 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 ZNF441Q8N8Z8 693 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 COQ8AQ8NI60 647 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 SLC41A2Q96JW4 573 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 TINAGL1Q9GZM7 467 aaPredicted RBP16.09■□□□□ 0.17
VIM-206ENST00000487938 PRMT8Q9NR22 394 aaPredicted RBP16.09■□□□□ 0.17
VIM-206ENST00000487938 CA14Q9ULX7 337 aa16.09■□□□□ 0.17
VIM-206ENST00000487938 IGKV1D-43A0A0B4J1Z2 117 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 TEX51A0A1B0GUA7 166 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 EIF1AYO14602 144 aaKnown RBP16.08■□□□□ 0.17
VIM-206ENST00000487938 ZNF823P16415 610 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 IGFBP3P17936 291 aaPredicted RBP16.08■□□□□ 0.17
VIM-206ENST00000487938 CRABP1P29762 137 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 OR7A5Q15622 319 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 MOGAT2Q3SYC2 334 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 ZNF248Q8NDW4 579 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 RBPMSQ93062 196 aaKnown RBP16.08■□□□□ 0.17
VIM-206ENST00000487938 ARL6Q9H0F7 186 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 SLC17A5Q9NRA2 495 aa16.08■□□□□ 0.17
VIM-206ENST00000487938 KCNN3Q9UGI6 736 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms