RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 FABP3P05413 133 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 CDK1P06493 297 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TSPAN19P0C672 248 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 DBTP11182 482 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 B4GALT1P15291 398 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 NELFEP18615 380 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 STOMP27105 288 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 PPP2R1BP30154 601 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 RGS6P49758 472 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TPMTP51580 245 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 SMIM11AP58511 58 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 AP3S2P59780 193 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 RRAS2P62070 204 aaPredicted RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 TRA2BP62995 288 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 PITPNAQ00169 270 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 SPP2Q13103 211 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 AQP6Q13520 282 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 DGCR6Q14129 220 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 MAD2L1BPQ15013 274 aaPredicted RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 DEFB115Q30KQ5 88 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TTLL9Q3SXZ7 439 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 RNF212Q495C1 297 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 VPS26BQ4G0F5 336 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 LDLRAP1Q5SW96 308 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 ZNF678Q5SXM1 525 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 OR2T5Q6IEZ7 315 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 SPESP1Q6UW49 350 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TEX261Q6UWH6 196 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 CMC1Q7Z7K0 106 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 IFNEQ86WN2 208 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 APOBEC3FQ8IUX4 373 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 BBS7Q8IWZ6 715 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 C11orf53Q8IXP5 236 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 EIF4E3Q8N5X7 224 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 PQLC3Q8N755 202 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TRPV1Q8NER1 839 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 OR4F6Q8NGB9 312 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 OR2T29Q8NH02 315 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 MRAPQ8TCY5 172 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 ZNF675Q8TD23 568 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 ZNF431Q8TF32 576 aaPredicted RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 KCTD4Q8WVF5 259 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TWIST2Q8WVJ9 160 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 ARNTL2Q8WYA1 636 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 DCPSQ96C86 337 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 C11orf24Q96F05 449 aaPredicted RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 CAPNS2Q96L46 248 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TSGA13Q96PP4 275 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 OR2M2Q96R28 347 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TRIB3Q96RU7 358 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 PITX2Q99697 317 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 GAL3ST1Q99999 423 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 SNRNP25Q9BV90 132 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 CDCA4Q9BXL8 241 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 UCK2Q9BZX2 261 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 SLC7A5P2Q9GIP4 190 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 NAA50Q9GZZ1 169 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 POLR3FQ9H1D9 316 aaPredicted RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 MED28Q9H204 178 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 AKIRIN1Q9H9L7 192 aaPredicted RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 TIGARQ9NQ88 270 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 IFT46Q9NQC8 304 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 HEBP1Q9NRV9 189 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TNFRSF19Q9NS68 423 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 ABCC13Q9NSE7 274 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 DCAF13Q9NV06 445 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 AIG1Q9NVV5 245 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 CMTM6Q9NX76 183 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 ERVK-18Q9QC07 812 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 ABCG2Q9UNQ0 655 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 FOXA2Q9Y261 457 aaPredicted RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 RPL36Q9Y3U8 105 aaKnown RBP4.44□□□□□ -1.7
USP40-213ENST00000483216 HSPB11Q9Y547 144 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 U3KQ87 197 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 RALGAPA1Q6GYQ0 2036 aa4.44□□□□□ -1.7
USP40-213ENST00000483216 TRAV9-2A0A087WT02 112 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 PQLC2LA1A4F0 135 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 ARRDC5A6NEK1 342 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 A8MT66 165 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 LEUTXA8MZ59 168 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 C19orf81C9J6K1 198 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 ATP6V1G2-DDX39BF2Z307 99 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 hCG_2039718K7EN88 272 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 SGK494L7N484 410 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 CXCR6O00574 342 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 CASC3O15234 703 aaKnown RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 TSPAN2O60636 221 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 HUS1O60921 280 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 STX11O75558 287 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 RHOBTB1O94844 696 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 TXNDC12O95881 172 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 OTCP00480 354 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 IGHG3P01860 377 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 HLA-DQB1P01920 261 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 SBK2P0C263 348 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 RRASP10301 218 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 PRPS2P11908 318 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 CYP2B6P20813 491 aa4.43□□□□□ -1.7
USP40-213ENST00000483216 MAPK3P27361 379 aaPredicted RBP4.43□□□□□ -1.7
USP40-213ENST00000483216 CA5AP35218 305 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms