RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 OR5B12Q96R08 314 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 VPS37BQ9H9H4 285 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 SLC40A1Q9NP59 571 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 LHX9Q9NQ69 397 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 GPATCH2LQ9NWQ4 482 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 HRASLS2Q9NWW9 162 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 PTTG3PQ9NZH4 202 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 LGALS13Q9UHV8 139 aa1.76□□□□□ -2.13
CCDC88A-212ENST00000474059 MAPK8IP3Q9UPT6 1336 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 IGKV1D-17A0A075B6S4 117 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 IGHV3-66A0A0C4DH42 116 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 INS-IGF2F8WCM5 200 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 NDUFAB1O14561 156 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 CHST1O43916 411 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 EIF4E2O60573 245 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 KLHL41O60662 606 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 CDH16O75309 829 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 SPAG7O75391 227 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 ZNF324O75467 553 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 MED6O75586 246 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 OR2F2O95006 317 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 GABARAPO95166 117 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 ACSM4P0C7M7 580 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 ZNF823P16415 610 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 MAGP20916 626 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 GTF2E2P29084 291 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 LONP1P36776 959 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 SYKP43405 635 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 RPS9P46781 194 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 CX3CR1P49238 355 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 RND2P52198 227 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 ZNF138P52744 262 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 LIPEQ05469 1076 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 EIF4EBP1Q13541 118 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 PTPN20Q4JDL3 420 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 SPANXN2Q5MJ10 180 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 TMEM220Q6QAJ8 160 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 DUX4L9Q6RFH8 374 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 FAM92BQ6ZTR7 304 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 BZW1Q7L1Q6 419 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 LUZP2Q86TE4 346 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 SAXO1Q8IYX7 474 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 CMTM1Q8IZ96 169 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 FAM86B1Q8N7N1 296 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 ZFP41Q8N8Y5 198 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 C15orf56Q8N910 161 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 CCDC148Q8NFR7 591 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 STARD8Q92502 1023 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 MCUR1Q96AQ8 359 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 EXOSC8Q96B26 276 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 FOPNLQ96NB1 174 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 CHAC1Q9BUX1 264 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 GEMIN7Q9H840 131 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 NOX3Q9HBY0 568 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 TMEM9BQ9NQ34 198 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 NECAP2Q9NVZ3 263 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 GCNT4Q9P109 453 aa1.75□□□□□ -2.13
CCDC88A-212ENST00000474059 TRBV9A0A0B4J1U6 114 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 IGHV5-51A0A0C4DH38 117 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 A0A1B0GVX0 72 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 NUPL2O15504 423 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 HUS1O60921 280 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 CLDN11O75508 207 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 OR5H8P0DN80 308 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 MYL2P10916 166 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 RAB3BP20337 219 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 BCKDHBP21953 392 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 DCKP27707 260 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 CSNK1A1P48729 337 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 CRISP1P54107 249 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 STXBP1P61764 594 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 GBE1Q04446 702 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 TCP10Q12799 353 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 MERTKQ12866 999 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 MAB21L1Q13394 359 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 PTGES3Q15185 160 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 ZNF726P1Q15940 193 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 CENPQQ7L2Z9 268 aaPredicted RBP1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 SCD5Q86SK9 330 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 CYB561D1Q8N8Q1 229 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 NOXO1Q8NFA2 376 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 OR2A1Q8NGT9 310 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 LYPD6BQ8NI32 183 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 CAPSLQ8WWF8 208 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 NRGNQ92686 78 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 DNAJC1Q96KC8 554 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 OR2A5Q96R48 311 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 BPIFA3Q9BQP9 254 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 SLC25A2Q9BXI2 301 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 ISYNA1Q9NPH2 558 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 CCDC59Q9P031 241 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 TMED5Q9Y3A6 229 aa1.74□□□□□ -2.13
CCDC88A-212ENST00000474059 INSRP06213 1382 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 GPATCH8Q9UKJ3 1502 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 IGHV3-74A0A0B4J1X5 117 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 SERTM2A0A1B0GWG4 89 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 SMKR1H3BMG3 65 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 AIREO43918 545 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 DNAJB6O75190 326 aa1.73□□□□□ -2.13
CCDC88A-212ENST00000474059 FKBP6O75344 327 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms