RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 LRMDAQ9H2I8 198 aa16.3■□□□□ 0.2
PTCD3-210ENST00000473829 CDH20Q9HBT6 801 aa16.3■□□□□ 0.2
PTCD3-210ENST00000473829 BARX1Q9HBU1 254 aaPredicted RBP16.3■□□□□ 0.2
PTCD3-210ENST00000473829 FZR1Q9UM11 496 aa16.3■□□□□ 0.2
PTCD3-210ENST00000473829 CMAHPQ9Y471 501 aa16.3■□□□□ 0.2
PTCD3-210ENST00000473829 SPEF1Q9Y4P9 236 aa16.3■□□□□ 0.2
PTCD3-210ENST00000473829 PMF1-BGLAPU3KQ54 211 aa16.3■□□□□ 0.2
PTCD3-210ENST00000473829 ZANQ9Y493 2812 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 OR6C68A6NDL8 312 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 SMAD7O15105 426 aaKnown RBP16.29■□□□□ 0.2
PTCD3-210ENST00000473829 ATP5HO75947 161 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 PTHP01270 115 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 INHBBP09529 407 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 GAAP10253 952 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 STOMP27105 288 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 APLNRP35414 380 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 WNT5AP41221 380 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 GUCA1AP43080 201 aaPredicted RBP16.29■□□□□ 0.2
PTCD3-210ENST00000473829 RASSF2P50749 326 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 NUDT6P53370 316 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 ERVS71-1P61550 626 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 CBX1P83916 185 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 RPL13AP3Q6NVV1 102 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 LRP11Q86VZ4 500 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 OR6V1Q8N148 313 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 ZNF525Q8N782 197 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 NPEPL1Q8NDH3 523 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 OR52L1Q8NGH7 329 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 OR52E2Q8NGJ4 325 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 OR4Q3Q8NH05 313 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 GIPC3Q8TF64 312 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 C11orf40Q8WZ69 217 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 SNX18Q96RF0 628 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 FEVQ99581 238 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 SYT3Q9BQG1 590 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 BDH2Q9BUT1 245 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 RPRD1BQ9NQG5 326 aaKnown RBP16.29■□□□□ 0.2
PTCD3-210ENST00000473829 TBC1D23Q9NUY8 699 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 ARMC1Q9NVT9 282 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 MYEF2Q9P2K5 600 aaKnown RBP16.29■□□□□ 0.2
PTCD3-210ENST00000473829 TIMM10BQ9Y5J6 103 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 CR1P17927 2039 aa16.29■□□□□ 0.2
PTCD3-210ENST00000473829 CHD3Q12873 2000 aaKnown RBP16.28■□□□□ 0.2
PTCD3-210ENST00000473829 C12orf71A8MTZ7 269 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 IDH3BO43837 385 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 RENP00797 406 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 BMP4P12644 408 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 CCNOP22674 350 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 NOS3P29474 1203 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 PPOXP50336 477 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.28■□□□□ 0.2
PTCD3-210ENST00000473829 GK3PQ14409 553 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 MEP1BQ16820 701 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 ZNF362Q5T0B9 420 aaPredicted RBP16.28■□□□□ 0.2
PTCD3-210ENST00000473829 SYT9Q86SS6 491 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 ZNF101Q8IZC7 436 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 ZCCHC24Q8N2G6 241 aaKnown RBP16.28■□□□□ 0.2
PTCD3-210ENST00000473829 OR1J2Q8NGS2 313 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 TSSK6Q9BXA6 273 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 SRA1Q9HD15 236 aaKnown RBP16.28■□□□□ 0.2
PTCD3-210ENST00000473829 B9D1Q9UPM9 204 aa16.28■□□□□ 0.2
PTCD3-210ENST00000473829 C5orf49A4QMS7 147 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 ARRDC5A6NEK1 342 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 GNGT2O14610 69 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 HOXB6P17509 224 aaKnown RBP16.27■□□□□ 0.2
PTCD3-210ENST00000473829 GSTM3P21266 225 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 CRABP1P29762 137 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 EFNA4P52798 201 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 UCP2P55851 309 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 PCBD1P61457 104 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 RPS23P62266 143 aaKnown RBP16.27■□□□□ 0.2
PTCD3-210ENST00000473829 KCNMB1Q16558 191 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 ZBTB46Q86UZ6 589 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 CYB561A3Q8NBI2 242 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 DDOQ99489 341 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 VRK1Q99986 396 aaPredicted RBP16.27■□□□□ 0.2
PTCD3-210ENST00000473829 RACGAP1Q9H0H5 632 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 NTN4Q9HB63 628 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 PDP1Q9P0J1 537 aaPredicted RBP16.27■□□□□ 0.2
PTCD3-210ENST00000473829 ASH2LQ9UBL3 628 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 DNAJB9Q9UBS3 223 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 REV1Q9UBZ9 1251 aa16.27■□□□□ 0.2
PTCD3-210ENST00000473829 IGHV4-30-2A0A087WSY4 118 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 FAM171A2A8MVW0 826 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 VSTM5A8MXK1 200 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 RNF223E7ERA6 249 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 TIPRLO75663 272 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 PCSK6P29122 969 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 CENPAP49450 140 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 GDI2P50395 445 aaKnown RBP16.26■□□□□ 0.19
PTCD3-210ENST00000473829 LSM6P62312 80 aaKnown RBP16.26■□□□□ 0.19
PTCD3-210ENST00000473829 AQP6Q13520 282 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 CCNIQ14094 377 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 MAD2L1BPQ15013 274 aaPredicted RBP16.26■□□□□ 0.19
PTCD3-210ENST00000473829 RGS7BPQ6MZT1 257 aaPredicted RBP16.26■□□□□ 0.19
PTCD3-210ENST00000473829 DNM1P34Q6PK57 102 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 CD300LDQ6UXZ3 194 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 RFPL4BQ6ZWI9 263 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 ASRGL1Q7L266 308 aa16.26■□□□□ 0.19
PTCD3-210ENST00000473829 VASH1Q7L8A9 365 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms