RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CCL8P80075 99 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 ENDOGQ14249 297 aaKnown RBP13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 MESTQ5EB52 335 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 ZNF774Q6NX45 483 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 FOXL2NBQ6ZUU3 175 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 CPLX4Q7Z7G2 160 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 ALDH16A1Q8IZ83 802 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 FAM86B1Q8N7N1 296 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 FAM156AQ8NDB6 213 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 CLDND2Q8NHS1 167 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 SLC25A40Q8TBP6 338 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 RASD2Q96D21 266 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 ZNF416Q9BWM5 594 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 EMC7Q9NPA0 242 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 POLE4Q9NR33 117 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 NDUFAF4Q9P032 175 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 SAMD4AQ9UPU9 718 aaKnown RBP13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 TIMM10BQ9Y5J6 103 aa13.42□□□□□ -0.26
CCDC88B-205ENST00000472524 DYSFO75923 2080 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 TRBV4-1A0A0J9YWV2 114 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 A0A1W2PRQ8 180 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 C12orf71A8MTZ7 269 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 HAX1O00165 279 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 WNT9BO14905 357 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 MT-ND5P03915 603 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 SCG5P05408 212 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 RHCEP18577 417 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 GCH1P30793 250 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 MPV17P39210 176 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 PCBD1P61457 104 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 KRR1Q13601 381 aaKnown RBP13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 DGCR6Q14129 220 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 TSTQ16762 297 aaKnown RBP13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 ZNF718Q3SXZ3 478 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 UGT2A3Q6UWM9 527 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 RFPL4BQ6ZWI9 263 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 FAM122BQ7Z309 247 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 ABHD4Q8TB40 342 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 IPCEF1Q8WWN9 437 aaPredicted RBP13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 RERGLQ9H628 205 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 DCAF13Q9NV06 445 aaKnown RBP13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 IL20RAQ9UHF4 553 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 ARHGAP32A7KAX9 2087 aa13.41□□□□□ -0.26
CCDC88B-205ENST00000472524 TEX13CA0A0J9YWL9 993 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 PRSS37A4D1T9 235 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 RP2O75695 350 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 NDUFB2O95178 105 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 IGHV3-13P01766 116 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 LIMS1P48059 325 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 ZNF81P51508 661 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 TMEM33P57088 247 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 PPP1CBP62140 327 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 MRPS11P82912 194 aaKnown RBP13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 KRT72Q14CN4 511 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 MOGQ16653 247 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 PCGF3Q3KNV8 242 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 TMEM255AQ5JRV8 349 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 OTPQ5XKR4 325 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 UNQ6126/PRO20091Q6UXV3 157 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 THSD4Q6ZMP0 1018 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 OR52J3Q8NH60 311 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 MARS2Q96GW9 593 aaKnown RBP13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 C1orf159Q96HA4 380 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 RSRC1Q96IZ7 334 aaKnown RBP13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 C7orf34Q96L11 122 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 OR2J1Q9GZK6 312 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 LPAR2Q9HBW0 351 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 DECR2Q9NUI1 292 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 TREM2Q9NZC2 230 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 AURKCQ9UQB9 309 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 SIGLEC7Q9Y286 467 aa13.4□□□□□ -0.26
CCDC88B-205ENST00000472524 FAM157AC9JC47 383 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 SOCS2O14508 198 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 IMPA2O14732 288 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 SPRY3O43610 288 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 DOK2O60496 412 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 NGFP01138 241 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 CTLA4P16410 223 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 SDHAP31040 664 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 OMPP47874 163 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 HTR5AP47898 357 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 GYS2P54840 703 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 SEC23BQ15437 767 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 AVPI1Q5T686 147 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 RINLQ6ZS11 566 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 USP51Q70EK9 711 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 KLF14Q8TD94 323 aaPredicted RBP13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 C4orf45Q96LM5 186 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 SYT4Q9H2B2 425 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 SAP30LQ9HAJ7 183 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 KRCC1Q9NPI7 259 aaPredicted RBP13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 NKIRAS2Q9NYR9 191 aa13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 TMEFF2Q9UIK5 374 aaPredicted RBP13.39□□□□□ -0.27
CCDC88B-205ENST00000472524 IGHV1-69-2A0A0G2JMI3 117 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 PLSCR5A0PG75 271 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 UNC119BA6NIH7 251 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 B4DSR2 109 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 AHCYL1O43865 530 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 SLC16A7O60669 478 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 PTP4A3O75365 173 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms