RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 LRRC18Q8N456 261 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 BOLLQ8N9W6 283 aaKnown RBP10.53□□□□□ -0.72
NPHP4-204ENST00000460696 NPEPL1Q8NDH3 523 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 OR14L1PQ8NHC6 308 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 SMIM4Q8WVI0 70 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 SDHCQ99643 169 aaPredicted RBP10.53□□□□□ -0.72
NPHP4-204ENST00000460696 MICU1Q9BPX6 476 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 MARVELD1Q9BSK0 173 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 ZNF436Q9C0F3 470 aaPredicted RBP10.53□□□□□ -0.72
NPHP4-204ENST00000460696 ANKRD10Q9NXR5 420 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 ROS1P08922 2347 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 OTOGLQ3ZCN5 2332 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 HLA-AP01891 365 aaKnown RBP10.53□□□□□ -0.72
NPHP4-204ENST00000460696 APOC3P02656 99 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 GPR3P46089 330 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 RAP2BP61225 183 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 OPCMLQ14982 345 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 CHRFAM7AQ494W8 412 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 CREB3L2Q70SY1 520 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 SHISA5Q8N114 240 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 LSMEM1Q8N8F7 131 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 GALNT11Q8NCW6 608 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 HOXB13Q92826 284 aaPredicted RBP10.53□□□□□ -0.72
NPHP4-204ENST00000460696 VN1R1Q9GZP7 353 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 EMC7Q9NPA0 242 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 TAS2R3Q9NYW6 316 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 ZNF223Q9UK11 482 aaPredicted RBP10.53□□□□□ -0.72
NPHP4-204ENST00000460696 ETV7Q9Y603 341 aa10.53□□□□□ -0.72
NPHP4-204ENST00000460696 TMEM82A0PJX8 343 aa10.52□□□□□ -0.72
NPHP4-204ENST00000460696 PIAS2O75928 621 aa10.52□□□□□ -0.72
NPHP4-204ENST00000460696 ZNF35P13682 527 aa10.52□□□□□ -0.72
NPHP4-204ENST00000460696 SNU13P55769 128 aaKnown RBP10.52□□□□□ -0.72
NPHP4-204ENST00000460696 IL13RA1P78552 427 aa10.52□□□□□ -0.72
NPHP4-204ENST00000460696 FAM189A2Q15884 450 aa10.52□□□□□ -0.72
NPHP4-204ENST00000460696 MVB12AQ96EY5 273 aa10.52□□□□□ -0.72
NPHP4-204ENST00000460696 ABHD6Q9BV23 337 aa10.52□□□□□ -0.72
NPHP4-204ENST00000460696 DUSP23Q9BVJ7 150 aa10.52□□□□□ -0.72
NPHP4-204ENST00000460696 LOC100289279A0A1B0GTE1 492 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 LOC107986453A0A1B0GWG9 222 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 SHISA3A0PJX4 238 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF780AO75290 641 aaPredicted RBP10.52□□□□□ -0.73
NPHP4-204ENST00000460696 TSPAN9O75954 239 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 HTR3BO95264 441 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 F10P00742 488 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 KNG1P01042 644 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 GLB1P16278 677 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 GALP22466 123 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 CSNK1A1P48729 337 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 MMP15P51511 669 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 AKR1D1P51857 326 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 GUCA2AQ02747 115 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 SLC17A1Q14916 467 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 C2orf76Q3KRA6 126 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 EMC4Q5J8M3 183 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 MAMSTRQ6ZN01 415 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 Q6ZTK2 550 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF615Q8N8J6 731 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 CCNL2Q96S94 520 aaPredicted RBP10.52□□□□□ -0.73
NPHP4-204ENST00000460696 KCNN3Q9UGI6 736 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 SIGLEC6O43699 453 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 PTP4A3O75365 173 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 P04436 131 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 SMIM10L1P0DMW3 83 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 CALCBP10092 127 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 PNLIPRP2P54317 469 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 CLDN17P56750 224 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 ETFDHQ16134 617 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 OR5T2Q8NGG2 359 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 OR51T1Q8NGJ9 327 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 SMIM10Q96HG1 83 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 RHBDD3Q9Y3P4 386 aa10.52□□□□□ -0.73
NPHP4-204ENST00000460696 IGHV1OR21-1A0A087WYE8 117 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 A6NCN8 305 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 TMEM235A6NFC5 223 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 SULT1B1O43704 296 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 RLN2P04090 185 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 LCATP04180 440 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 BDKRB2P30411 391 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 SLC26A5P58743 744 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 RNF4P78317 190 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 HSF1Q00613 529 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 SRYQ05066 204 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 FMODQ06828 376 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 IL10RAQ13651 578 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 CDONQ4KMG0 1287 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 GRAMD2AQ8IUY3 354 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 FAM109AQ8N4B1 249 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 ZNF454Q8N9F8 522 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 ZBTB8AQ96BR9 441 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 SCGB3A2Q96PL1 93 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 SORCS2Q96PQ0 1159 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 TXNIPQ9H3M7 391 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 C14orf166Q9Y224 244 aaKnown RBP10.51□□□□□ -0.73
NPHP4-204ENST00000460696 DIDO1Q9BTC0 2240 aaKnown RBP10.51□□□□□ -0.73
NPHP4-204ENST00000460696 RAF1P04049 648 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 NGFRP08138 427 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 NFYAP23511 347 aaPredicted RBP10.51□□□□□ -0.73
NPHP4-204ENST00000460696 FASLGP48023 281 aa10.51□□□□□ -0.73
NPHP4-204ENST00000460696 SNRPNP63162 240 aaKnown RBP10.51□□□□□ -0.73
NPHP4-204ENST00000460696 CSNK2A1P68400 391 aaPredicted RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms