RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 MMP28Q9H239 520 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 TLE6Q9H808 572 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 UBE2ZQ9H832 354 aaPredicted RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 GPR173Q9NS66 373 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 ACOXLQ9NUZ1 547 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 CLN6Q9NWW5 311 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 NPAP1Q9NZP6 1156 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 GHRLQ9UBU3 117 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 OR12D3Q9UGF7 316 aa4.81□□□□□ -1.64
VPS41-209ENST00000457055 UTP11Q9Y3A2 253 aaKnown RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 RBM7Q9Y580 266 aaKnown RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 ZNF646O15015 1829 aaPredicted RBP4.81□□□□□ -1.64
VPS41-209ENST00000457055 TRAV8-7A0A075B6U6 113 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 PPIAL4CA0A0B4J2A2 164 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 A0A1W2PRF3 423 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 A0A1W2PRM7 423 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 C21orf140B9A014 251 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 PPP5D1E7EU14 171 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 ANHXE9PGG2 379 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 F5H768 121 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 MS4A18H0YCH9 400 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 M0QZ24 198 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 DCTN6O00399 190 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 TP53I11O14683 189 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 CASKO14936 926 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 NKX2-8O15522 239 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 RNASEH1O60930 286 aaKnown RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 ZNF217O75362 1048 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 CREG1O75629 220 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 CLDN7O95471 211 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 GPANK1O95872 356 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 IGSF6O95976 241 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 IGF2P01344 180 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 C1QBP02746 253 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 NR3C1P04150 777 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 SBK3P0C264 359 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 PPIAL4GP0DN37 164 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 HGFP14210 728 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 HIST1H1CP16403 213 aaKnown RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 CD1CP29017 333 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 HSD17B3P37058 310 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 GPR1P46091 355 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 QARSP47897 775 aaKnown RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 PRLHRP49683 370 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 RARRES1P49788 294 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 DAP3P51398 398 aaKnown RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 NUDT6P53370 316 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 COPZ1P61923 177 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 RPL32P62910 135 aaKnown RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 FHL3Q13643 280 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 EXOSC2Q13868 293 aaKnown RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 PRTGQ2VWP7 1150 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 SFT2D3Q587I9 215 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 ARL13AQ5H913 290 aaPredicted RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 C22orf42Q6IC83 251 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 CCDC144NLQ6NUI1 221 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 CD200R1LQ6Q8B3 271 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 TMEM205Q6UW68 189 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 SCIMPQ6UWF3 145 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 OLIG3Q7RTU3 272 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 SLC16A13Q7RTY0 426 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 WDR53Q7Z5U6 358 aaPredicted RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 LRRC28Q86X40 367 aaPredicted RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 CADM2Q8N3J6 435 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 FGFRL1Q8N441 504 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 JAGN1Q8N5M9 183 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 ZNF383Q8NA42 475 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 OR4D5Q8NGN0 318 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 OR1K1Q8NGR3 316 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 OR6K2Q8NGY2 324 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 TFGQ92734 400 aaPredicted RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 NTNG2Q96CW9 530 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 PRMT6Q96LA8 375 aaPredicted RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 ZNF778Q96MU6 729 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 CDX2Q99626 313 aaPredicted RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 TIMP4Q99727 224 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 ARHGDIGQ99819 225 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 MROQ9BYG7 248 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 SPRTNQ9H040 489 aaPredicted RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 MIXL1Q9H2W2 232 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 FAM96AQ9H5X1 160 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 ARMC7Q9H6L4 198 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 FKRPQ9H9S5 495 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 Q9N2K0 584 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 SPAG4Q9NPE6 437 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 TMEM74BQ9NUR3 256 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 PAK1IP1Q9NWT1 392 aaPredicted RBP4.8□□□□□ -1.64
VPS41-209ENST00000457055 TAS2R13Q9NYV9 303 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 NLKQ9UBE8 527 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 KCNE5Q9UJ90 142 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 ZNF221Q9UK13 617 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 FBXO5Q9UKT4 447 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 SSR3Q9UNL2 185 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 B3GALT5Q9Y2C3 310 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 COLEC10Q9Y6Z7 277 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 NUP98P52948 1817 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 MRC1P22897 1456 aa4.8□□□□□ -1.64
VPS41-209ENST00000457055 RTL1A6NKG5 1358 aa4.79□□□□□ -1.64
VPS41-209ENST00000457055 ABCB11O95342 1321 aa4.79□□□□□ -1.64
VPS41-209ENST00000457055 A0A1W2PPE3 182 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms