RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 TCTN2Q96GX1 697 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 ZBTB45Q96K62 511 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-204ENST00000455883 PMCHL2Q9BQD1 86 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 EGLN3Q9H6Z9 239 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 STARD5Q9NSY2 213 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 PADI3Q9ULW8 664 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 PCDH15Q96QU1 1955 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 LIPFP07098 398 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 RPL35P42766 123 aaKnown RBP4.81□□□□□ -1.64
CSMD3-204ENST00000455883 KIAA0141Q14154 515 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-204ENST00000455883 IER2Q9BTL4 223 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 NAA50Q9GZZ1 169 aaKnown RBP4.81□□□□□ -1.64
CSMD3-204ENST00000455883 FAM206AQ9NX38 181 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 LRP5O75197 1615 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 TCRBV7S2A1N4TA0A589 114 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 SERTM1A2A2V5 107 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 XRCC2O43543 280 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 SH3BGRLO75368 114 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 MTHFD2P13995 350 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 ZNF16P17020 682 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-204ENST00000455883 TNFSF9P41273 254 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 JAG1P78504 1218 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 HTRA3P83110 453 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 TRMT12Q53H54 448 aaKnown RBP4.81□□□□□ -1.64
CSMD3-204ENST00000455883 PLBD1Q6P4A8 553 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 OR52E2Q8NGJ4 325 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 ADTRPQ96IZ2 230 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 S1PR3Q99500 378 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 IL25Q9H293 177 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 DSCR3O14972 297 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 SOX14O95416 240 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 SOX3P41225 446 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 RIPPLY2Q5TAB7 128 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 B3GNT8Q7Z7M8 397 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 FAM219AQ8IW50 185 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 ANGPTL4Q9BY76 406 aa4.81□□□□□ -1.64
CSMD3-204ENST00000455883 HEMK1Q9Y5R4 338 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-204ENST00000455883 PRAMEF26H0Y7S4 382 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 GPR75O95800 540 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 GCGP01275 180 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 GNB3P16520 340 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 GABRA3P34903 492 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 DIO3P55073 304 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 C21orf62-AS1Q17RA5 79 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 OR13C5Q8NGS8 318 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 LCORQ96JN0 433 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-204ENST00000455883 HS3ST2Q9Y278 367 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 YARS2Q9Y2Z4 477 aaKnown RBP4.8□□□□□ -1.64
CSMD3-204ENST00000455883 RNF11Q9Y3C5 154 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 H3BNC9 293 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 M0QZQ0 153 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 CLIC3O95833 236 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 HMGA2P52926 109 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 ZNF791Q3KP31 576 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-204ENST00000455883 LETMD1Q6P1Q0 360 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 Q6ZTK2 550 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 KMT5CQ86Y97 462 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 OR8G5Q8NG78 346 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 FAM3DQ96BQ1 224 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 TRMT61BQ9BVS5 477 aaKnown RBP4.8□□□□□ -1.64
CSMD3-204ENST00000455883 GPR62Q9BZJ7 368 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 GSTO2Q9H4Y5 243 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 A0A0J9YY10 115 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 A0A1B0GTQ1 180 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 PCCBP05166 539 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 SNRNP70P08621 437 aaKnown RBP4.8□□□□□ -1.64
CSMD3-204ENST00000455883 CRISP2P16562 243 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 NDUFB7P17568 137 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 ZNF140P52738 457 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-204ENST00000455883 MGAT3Q09327 533 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 SLC14A1Q13336 389 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 GRB7Q14451 532 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 C2orf76Q3KRA6 126 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 THNSL2Q86YJ6 484 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 EXD3Q8N9H8 876 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 ZFYVE21Q9BQ24 234 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 ADAMTS7Q9UKP4 1686 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 COL24A1Q17RW2 1714 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 SHANK3Q9BYB0 1731 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 TARM1B6A8C7 271 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 RAB27BO00194 218 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 CDC123O75794 336 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-204ENST00000455883 ZFAND5O76080 213 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 ZNF44P15621 663 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 EVX1P49640 407 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 DGKEP52429 567 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 MPV17LQ2QL34 196 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 DRAM2Q6UX65 266 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 LHFPL2Q6ZUX7 228 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 SLC25A44Q96H78 314 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-204ENST00000455883 OBP2AQ9NY56 170 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 AP4M1O00189 453 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 HOXB1P14653 301 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-204ENST00000455883 DAOP14920 347 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 PHF19Q5T6S3 580 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 C18orf63Q68DL7 685 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 SLC26A10Q8NG04 563 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 LMO3Q8TAP4 145 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 RAB8BQ92930 207 aa4.8□□□□□ -1.64
CSMD3-204ENST00000455883 C4orf36Q96KX1 117 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms