RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 OR2T5Q6IEZ7 315 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 DNM1P34Q6PK57 102 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 UNQ6126/PRO20091Q6UXV3 157 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 JAZF1Q86VZ6 243 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 GLB1L2Q8IW92 636 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 OR9Q2Q8NGE9 314 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 OR2T29Q8NH02 315 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 C10orf105Q8TEF2 133 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 C11orf40Q8WZ69 217 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 SAMD8Q96LT4 415 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 ZNF416Q9BWM5 594 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 WNT5BQ9H1J7 359 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 MS4A5Q9H3V2 200 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 REEP1Q9H902 201 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 EMC7Q9NPA0 242 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 EIF3KQ9UBQ5 218 aaKnown RBP13.07□□□□□ -0.32
LIMS3-201ENST00000437679 REV1Q9UBZ9 1251 aa13.07□□□□□ -0.32
LIMS3-201ENST00000437679 SAMHD1Q9Y3Z3 626 aaKnown RBP13.07□□□□□ -0.32
LIMS3-201ENST00000437679 NAV3Q8IVL0 2385 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 C5orf49A4QMS7 147 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 NDUFS8O00217 210 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 ACOT8O14734 319 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 ARPC3O15145 178 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 IDH3BO43837 385 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 RENP00797 406 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 TP53P04637 393 aaPredicted RBP13.06□□□□□ -0.32
LIMS3-201ENST00000437679 CRABP1P29762 137 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 CDKN2AP42771 156 aaKnown RBP13.06□□□□□ -0.32
LIMS3-201ENST00000437679 CENPAP49450 140 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 SCRN3Q0VDG4 424 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 RPL13AP3Q6NVV1 102 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 LEG1Q6P5S2 330 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 UGT2A3Q6UWM9 527 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 ZNF620Q6ZNG0 422 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 PTCHD4Q6ZW05 846 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 LRP11Q86VZ4 500 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 ZCCHC24Q8N2G6 241 aaKnown RBP13.06□□□□□ -0.32
LIMS3-201ENST00000437679 ICA1LQ8NDH6 482 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 OR52L1Q8NGH7 329 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 OR4C15Q8NGM1 316 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 SYNPRQ8TBG9 265 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 POM121L2Q96KW2 1035 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 FOXN4Q96NZ1 517 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 BTBD10Q9BSF8 475 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 PIMREGQ9BSJ6 248 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 NUAK2Q9H093 628 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 GPR160Q9UJ42 338 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 COA3Q9Y2R0 106 aaPredicted RBP13.06□□□□□ -0.32
LIMS3-201ENST00000437679 NF1P21359 2839 aa13.06□□□□□ -0.32
LIMS3-201ENST00000437679 CHD3Q12873 2000 aaKnown RBP13.05□□□□□ -0.32
LIMS3-201ENST00000437679 LOC100509620A0A075B734 347 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 LOC390937A0A1W2PQ73 354 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 AQP12BA6NM10 295 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 SCG5P05408 212 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 HOXB6P17509 224 aaKnown RBP13.05□□□□□ -0.32
LIMS3-201ENST00000437679 ALDH3B1P43353 468 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 KLF3P57682 345 aaPredicted RBP13.05□□□□□ -0.32
LIMS3-201ENST00000437679 LSM6P62312 80 aaKnown RBP13.05□□□□□ -0.32
LIMS3-201ENST00000437679 ZNF774Q6NX45 483 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 AQP12AQ8IXF9 295 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 AQP11Q8NBQ7 271 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 OR1J1Q8NGS3 322 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 OR4K13Q8NH42 304 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 SNX18Q96RF0 628 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 TPK1Q9H3S4 243 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 SLCO1C1Q9NYB5 712 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 NDRG4Q9ULP0 352 aaKnown RBP13.05□□□□□ -0.32
LIMS3-201ENST00000437679 CDH10Q9Y6N8 788 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 U3KQV3 271 aa13.05□□□□□ -0.32
LIMS3-201ENST00000437679 DHRS12A0PJE2 317 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 SGCEO43556 437 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 DNAJC8O75937 253 aaPredicted RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 GASTP01350 101 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 COX5BP10606 129 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 DAOP14920 347 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 ZNF250P15622 560 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 HIST1H1CP16403 213 aaKnown RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 ERVS71-1P61550 626 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 PPP2R2BQ00005 443 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 LOXL1Q08397 574 aaPredicted RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 PPP1R8Q12972 351 aaKnown RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 AQP6Q13520 282 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 MAD2L1BPQ15013 274 aaPredicted RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 MOGQ16653 247 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 NKPD1Q17RQ9 610 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 MICAQ29983 383 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 CLEC12AQ5QGZ9 265 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 ZNF770Q6IQ21 691 aaPredicted RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 PGM2L1Q6PCE3 622 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 ARL9Q6T311 187 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 C1orf174Q8IYL3 243 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 ADGRG5Q8IZF4 528 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 ZNF540Q8NDQ6 660 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 SNX33Q8WV41 574 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 SLC7A6OSQ96CW6 309 aaPredicted RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 NMNAT3Q96T66 252 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 CHID1Q9BWS9 393 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 EGLN3Q9H6Z9 239 aa13.04□□□□□ -0.32
LIMS3-201ENST00000437679 SRA1Q9HD15 236 aaKnown RBP13.04□□□□□ -0.32
LIMS3-201ENST00000437679 VNN3Q9NY84 501 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms