RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 PNPP00491 289 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 SPARCP09486 303 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 FBLP22087 321 aaKnown RBP12.28□□□□□ -0.44
COL6A3-207ENST00000433762 ABCD3P28288 659 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 NR0B1P51843 470 aaKnown RBP12.28□□□□□ -0.44
COL6A3-207ENST00000433762 FGL1Q08830 312 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 WDR45BQ5MNZ6 344 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 TMEM244Q5VVB8 128 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 RGS7BPQ6MZT1 257 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-207ENST00000433762 TMEM65Q6PI78 240 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 LRRC69Q6ZNQ3 347 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 NDUFAF7Q7L592 441 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 OVCH2Q7RTZ1 564 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 MUC20Q8N307 709 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-207ENST00000433762 D2HGDHQ8N465 521 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 ZNF248Q8NDW4 579 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 OR6K3Q8NGY3 331 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 ELF4Q99607 663 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-207ENST00000433762 REG4Q9BYZ8 158 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 LRP12Q9Y561 859 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 C5orf42Q9H799 3197 aa12.28□□□□□ -0.44
COL6A3-207ENST00000433762 LOC105371267A0A1B0GV96 52 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 RFPL4AA6NLU0 287 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 METTL12A8MUP2 240 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 C11orf98E9PRG8 122 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 RFPL4AL1F8VTS6 287 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 CD8AP01732 235 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 UBCP0CG48 685 aaKnown RBP12.27□□□□□ -0.44
COL6A3-207ENST00000433762 CTLA4P16410 223 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 ARRB1P49407 418 aaPredicted RBP12.27□□□□□ -0.44
COL6A3-207ENST00000433762 DAP3P51398 398 aaKnown RBP12.27□□□□□ -0.44
COL6A3-207ENST00000433762 H2BFSP57053 126 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 GPR85P60893 370 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 EIF2B1Q14232 305 aaKnown RBP12.27□□□□□ -0.44
COL6A3-207ENST00000433762 MEF2DQ14814 521 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 UBXN2BQ14CS0 331 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 ARHGAP40Q5TG30 622 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 LYPD6Q86Y78 171 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 CADM4Q8NFZ8 388 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 MFSD8Q8NHS3 518 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 CLIP3Q96DZ5 547 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 SEH1LQ96EE3 360 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 DPYSL5Q9BPU6 564 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 KLHDC3Q9BQ90 382 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 ULBP3Q9BZM4 244 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 ATG5Q9H1Y0 275 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 ZNF304Q9HCX3 659 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 RDH8Q9NYR8 311 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 GLS2Q9UI32 602 aa12.27□□□□□ -0.44
COL6A3-207ENST00000433762 A0A1B0GW55 424 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 TMEM200CA6NKL6 621 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 NUDT14O95848 222 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 RLN1P04808 185 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 ACSM4P0C7M7 580 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 DUX4L2P0CJ85 424 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 DUX4L3P0CJ86 424 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 DUX4L4P0CJ87 422 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 DUX4L5P0CJ88 424 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 DUX4L6P0CJ89 424 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 DUX4L7P0CJ90 424 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 GSK3AP49840 483 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 TAGLNQ01995 201 aaKnown RBP12.27□□□□□ -0.45
COL6A3-207ENST00000433762 GK2Q14410 553 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-207ENST00000433762 C1QL3Q5VWW1 255 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 KANSL1Q7Z3B3 1105 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 BIVMQ86UB2 503 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 BPHLQ86WA6 291 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-207ENST00000433762 SLC26A10Q8NG04 563 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 TNFAIP8L1Q8WVP5 186 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 PPA2Q9H2U2 334 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 CDCP1Q9H5V8 836 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 EXO5Q9H790 373 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 DUX4Q9UBX2 424 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 SLC22A13Q9Y226 551 aa12.27□□□□□ -0.45
COL6A3-207ENST00000433762 ADAMTS9Q9P2N4 1935 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 ANKUB1A6NFN9 424 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 RHPN2P1A8MT19 583 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 A8MUA0 341 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 MEN1O00255 615 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 KDM4BO94953 1096 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 RAB3DO95716 219 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 CD3DP04234 171 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 NMBP08949 121 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 HLA-GP17693 338 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 GSG1LQ6UXU4 331 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 PRSS42Q7Z5A4 293 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 HSD17B13Q7Z5P4 300 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-207ENST00000433762 SLC51BQ86UW2 128 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 PLXDC1Q8IUK5 500 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 PRR22Q8IZ63 422 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 SPERTQ8NA61 448 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 TSTD1Q8NFU3 115 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 OR5M1Q8NGP8 315 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 OR8K3Q8NH51 312 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 ASB10Q8WXI3 467 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 ATOH1Q92858 354 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-207ENST00000433762 SLC25A44Q96H78 314 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-207ENST00000433762 SDHAF2Q9NX18 166 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 FBLN5Q9UBX5 448 aa12.26□□□□□ -0.45
COL6A3-207ENST00000433762 SPEF1Q9Y4P9 236 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms