RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TRIM77I1YAP6 450 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 RAD1O60671 282 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 FUCA1P04066 466 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 GNB3P16520 340 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 APEX1P27695 318 aaKnown RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 NPBWR1P48145 328 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 PNLIPRP2P54317 469 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 TPPP2P59282 170 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 PPP1CAP62136 330 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 CSNK1G2P78368 415 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 ERHP84090 104 aaKnown RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SHEQ5VZ18 495 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 RPL7L1Q6DKI1 246 aaKnown RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 ADAM5Q6NVV9 412 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 USP53Q70EK8 1073 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 TSEN54Q7Z6J9 526 aaKnown RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 ARIH2OSQ8N7S6 290 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SMIM4Q8WVI0 70 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SECTM1Q8WVN6 248 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SPSB1Q96BD6 273 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 NEIL1Q96FI4 390 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SMG9Q9H0W8 520 aaKnown RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 CREBZFQ9NS37 354 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 R4GMQ9 66 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 KDM3BQ7LBC6 1761 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 FIGNL2A6NMB9 653 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 ZP3P21754 424 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SLC25A1P53007 311 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 RACK1P63244 317 aaKnown RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 ADIRFQ15847 76 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 MOGAT2Q3SYC2 334 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 TMEM176BQ3YBM2 270 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 FAM111BQ6SJ93 734 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF836Q6ZNA1 936 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 LILRA2Q8N149 483 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 STPG2Q8N412 459 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SPICQ8N5J4 248 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SLC39A7Q92504 469 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 YIPF6Q96EC8 236 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 TVP23CQ96ET8 276 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 OPALINQ96PE5 141 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 AMBRA1Q9C0C7 1298 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 LRIT1Q9P2V4 623 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 PIGLQ9Y2B2 252 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 KLF13Q9Y2Y9 288 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 PRSS21Q9Y6M0 314 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 NAV1Q8NEY1 1877 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 PEAK1Q9H792 1746 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 A0A0U1RQK1 487 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 DEGS1O15121 323 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 PRAMEF4O60810 478 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SCRG1O75711 98 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 CD22P20273 847 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 FGF7P21781 194 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 MDH2P40926 338 aaKnown RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 SLC6A11P48066 632 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 BIDP55957 195 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 NDUFA6P56556 154 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 GLYATL3Q5SZD4 288 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 IER5LQ5T953 404 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 METRNLQ641Q3 311 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 DLEU7Q6UYE1 221 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF813Q6ZN06 617 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF705AQ6ZN79 300 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 CDC20BQ86Y33 519 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 THAP3Q8WTV1 239 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-203ENST00000409050 C11orf40Q8WZ69 217 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 LMAN1LQ9HAT1 526 aa5.59□□□□□ -1.51
SCN1A-203ENST00000409050 OR6C68A6NDL8 312 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 ALOX12BO75342 701 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 SMIM18P0DKX4 95 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 CD37P11049 281 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 CPN1P15169 458 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 SSTR2P30874 369 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 PNRC1Q12796 327 aaPredicted RBP5.59□□□□□ -1.52
SCN1A-203ENST00000409050 FZD2Q14332 565 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 STK11Q15831 433 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 OR52W1Q6IF63 320 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 ETFRF1Q6IPR1 90 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 GTF2H5Q6ZYL4 71 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 GDPD3Q7L5L3 318 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 CPEB2Q7Z5Q1 589 aaKnown RBP5.59□□□□□ -1.52
SCN1A-203ENST00000409050 SIGLECL1Q8N7X8 197 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 SHISA4Q96DD7 197 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 OXGR1Q96P68 337 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 IER2Q9BTL4 223 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 ACER3Q9NUN7 267 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 MED9Q9NWA0 146 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 AK3Q9UIJ7 227 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 CCDC88AQ3V6T2 1871 aa5.59□□□□□ -1.52
SCN1A-203ENST00000409050 BCAT2O15382 392 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 CYTIPO60759 359 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 F7P08709 466 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 OMGP23515 440 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 MMP11P24347 488 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 CD27P26842 260 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SSTR4P31391 388 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RFC3P40938 356 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 LGALS4P56470 323 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RNF4P78317 190 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms