RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SDK1Q7Z5N4 2213 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 SOCS7O14512 581 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 PMP2P02689 132 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 ICAM2P13598 275 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 NID1P14543 1247 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 EIF1P41567 113 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 RPL29P47914 159 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 PSMB3P49720 205 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 CARD18P57730 90 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 TOMM20LQ6UXN7 152 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 NKAIN4Q8IVV8 208 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 MTURNQ8N3F0 131 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 SUMF1Q8NBK3 374 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 OR10D4PQ8NGN7 298 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 PHOSPHO2Q8TCD6 241 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 CD207Q9UJ71 328 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 LHX6Q9UPM6 363 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 NRXN3Q9Y4C0 1643 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 TCRBV5S2A0A599 114 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 K7ERU9 68 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 ZIC2O95409 532 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 CLDN1O95832 211 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 TTRP02766 147 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 ANXA7P20073 488 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 S100A7P31151 101 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 SRP9P49458 86 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 MAP2K6P52564 334 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 LYRM7Q5U5X0 104 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNF620Q6ZNG0 422 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 RBM45Q8IUH3 476 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 PLPP6Q8IY26 295 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 NHLRC2Q8NBF2 726 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 DMBX1Q8NFW5 382 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 REEP6Q96HR9 211 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 PRR14Q9BWN1 585 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 HCFC2Q9Y5Z7 792 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 TCF21O43680 179 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 CST2P09228 141 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 CCKARP32238 428 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 FAM26DQ5JW98 314 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 FBXO46Q6PJ61 603 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 OGFOD3Q6PK18 319 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 OR52I2Q8NH67 350 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNRF4Q8WWF5 429 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 NOL4LQ96MY1 436 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC22A12Q96S37 553 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 POFUT1Q9H488 388 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 CMC2Q9NRP2 79 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 NECAP2Q9NVZ3 263 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC25A37Q9NYZ2 338 aa9.41□□□□□ -0.9
LIMCH1-203ENST00000396595 A0A087X0M5 115 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 A0A1B0GX30 115 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 GFYI3L273 518 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 CTRB1P17538 263 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 P2RX3P56373 397 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 PPP2CAP67775 309 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 LIPNQ5VXI9 398 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 FOXB2Q5VYV0 432 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 LYSMD4Q5XG99 296 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 CTRB2Q6GPI1 263 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 GLIPR1L1Q6UWM5 242 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 PRSS42Q7Z5A4 293 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 LILRA3Q8N6C8 439 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 INTS12Q96CB8 462 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 POM121Q96HA1 1249 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 DCLRE1CQ96SD1 692 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 RNF167Q9H6Y7 350 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 HINT3Q9NQE9 182 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 HCSTQ9UBK5 93 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 PCDHGA9Q9Y5G4 932 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 CHEK1O14757 476 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 EIF4E2O60573 245 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 PRAMEF4O60810 478 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 SPP1P10451 314 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 CDK5Q00535 292 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 BAXQ07812 192 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNF750Q32MQ0 723 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 SMUG1Q53HV7 270 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 FAM78AQ5JUQ0 283 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 IL34Q6ZMJ4 242 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 ARL6IP6Q8N6S5 226 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 OR1S2Q8NGQ3 325 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 TOX2Q96NM4 488 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 ZMAT3Q9HA38 289 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 SPACA1Q9HBV2 294 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 CLCF1Q9UBD9 225 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 GNG12Q9UBI6 72 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 H7BYZ3 331 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 OLFM2O95897 454 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 ZP3P21754 424 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 AADACP22760 399 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC6A12P48065 614 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 UBE2G2P60604 165 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 HAGHQ16775 308 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 FCRL6Q6DN72 434 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 OLIG3Q7RTU3 272 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 ANGPTL5Q86XS5 388 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 NAXDQ8IW45 347 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 OR51A4Q8NGJ6 313 aa9.4□□□□□ -0.9
LIMCH1-203ENST00000396595 HSD17B8Q92506 261 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms