RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 EPG5Q9HCE0 2579 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 LOC390937A0A1W2PQ73 354 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 PRR23D1E9PI22 279 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-202ENST00000394943 PRR23D2P0DMB1 279 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF250P15622 560 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 PAICSP22234 425 aaKnown RBP6.08□□□□□ -1.44
LIMA1-202ENST00000394943 GSTT1P30711 240 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 SIRPAP78324 504 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 PSG4Q00888 419 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 SWI5Q1ZZU3 235 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 SLC36A2Q495M3 483 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 TMEM53Q6P2H8 277 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 C3P1Q6ZMU1 363 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 DNM1P46Q6ZS02 220 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.08□□□□□ -1.44
LIMA1-202ENST00000394943 SYS1Q8N2H4 156 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 RFKQ969G6 155 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 Q96MT0 163 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 NIPAL2Q9H841 368 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 WDR76Q9H967 626 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 RASSF1Q9NS23 344 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF391Q9UJN7 358 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 COA3Q9Y2R0 106 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-202ENST00000394943 DPRXA6NFQ7 191 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 DHRS7CA6NNS2 312 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 ARHGEF9O43307 516 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 SOX14O95416 240 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 OR2T7P0C7T2 308 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 AHCYP23526 432 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 RPL4P36578 427 aaKnown RBP6.08□□□□□ -1.44
LIMA1-202ENST00000394943 BDH1Q02338 343 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 SCRN3Q0VDG4 424 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 CDK5R2Q13319 367 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 TRIP10Q15642 601 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 ZBTB37Q5TC79 503 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF544Q6NX49 715 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 IQCF1Q8N6M8 205 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 CNEP1R1Q8N9A8 125 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 SDR9C7Q8NEX9 313 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 OR2T27Q8NH04 317 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 CYGBQ8WWM9 190 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 ALKBH3Q96Q83 286 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-202ENST00000394943 APOL4Q9BPW4 351 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF416Q9BWM5 594 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 CDCA4Q9BXL8 241 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 C12orf49Q9H741 205 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 TBCCD1Q9NVR7 557 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 CRIM1Q9NZV1 1036 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 PSORS1C1Q9UIG5 152 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.08□□□□□ -1.44
LIMA1-202ENST00000394943 DIMT1Q9UNQ2 313 aaKnown RBP6.08□□□□□ -1.44
LIMA1-202ENST00000394943 ORC6Q9Y5N6 252 aa6.08□□□□□ -1.44
LIMA1-202ENST00000394943 SBK2P0C263 348 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 DBTP11182 482 aaKnown RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 KITLGP21583 273 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 SSTR2P30874 369 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 RGS6P49758 472 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 AQP4P55087 323 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ETFDHQ16134 617 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF672Q499Z4 452 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 FBXW12Q6X9E4 464 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 KCTD20Q7Z5Y7 419 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 DHRSXQ8N5I4 330 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 CPEB3Q8NE35 698 aaKnown RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 GJC3Q8NFK1 279 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 OR1J2Q8NGS2 313 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 OR4K13Q8NH42 304 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 COG8Q96MW5 612 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 MYCBPQ99417 103 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 OPA3Q9H6K4 179 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 NDRG3Q9UGV2 375 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 LSM2Q9Y333 95 aaKnown RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 IGHV2OR16-5A0A0B4J2B6 119 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 SLC16A7O60669 478 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 AGFG2O95081 481 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 CD40P25942 277 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 TGM4P49221 684 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 GRB2P62993 217 aaKnown RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 NAAAQ02083 359 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 GSG1Q2KHT4 349 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 FAM209AQ5JX71 171 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 RBM48Q5RL73 367 aaKnown RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 TMEM236Q5W0B7 351 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 SP5Q6BEB4 398 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-202ENST00000394943 MDP1Q86V88 176 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 CPOQ8IVL8 374 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 LRRC75A-AS1Q8N1F1 130 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ICA1LQ8NDH6 482 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 VCXQ9H320 206 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 MOB1AQ9H8S9 216 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 DNAJC13O75165 2243 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 FAM208BQ5VWN6 2430 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ANKRD65E5RJM6 399 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ALX3O95076 343 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 CD55P08174 381 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ACSM4P0C7M7 580 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 DANCRP0C864 163 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 CALCRP30988 508 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 KIR2DL3P43628 341 aa6.07□□□□□ -1.44
LIMA1-202ENST00000394943 ACTC1P68032 377 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms