RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ADAMTS15Q8TE58 950 aa10.07□□□□□ -0.8
CUX1-204ENST00000393824 DUSP19Q8WTR2 217 aa10.07□□□□□ -0.8
CUX1-204ENST00000393824 ARL11Q969Q4 196 aa10.07□□□□□ -0.8
CUX1-204ENST00000393824 LRFN5Q96NI6 719 aa10.07□□□□□ -0.8
CUX1-204ENST00000393824 PRDM7Q9NQW5 492 aa10.07□□□□□ -0.8
CUX1-204ENST00000393824 STARD5Q9NSY2 213 aa10.07□□□□□ -0.8
CUX1-204ENST00000393824 SIGLEC7Q9Y286 467 aa10.07□□□□□ -0.8
CUX1-204ENST00000393824 CNOT1A5YKK6 2376 aaKnown RBP10.07□□□□□ -0.8
CUX1-204ENST00000393824 IGHV1OR21-1A0A087WYE8 117 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 IGHV5-51A0A0C4DH38 117 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 CPED1A4D0V7 1026 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 OR6C76A6NM76 312 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 RHPN2P1A8MT19 583 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 MAGEB4O15481 346 aaPredicted RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 NUDT21O43809 227 aaKnown RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 DNAJB6O75190 326 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ZIC2O95409 532 aaPredicted RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 GKN3PP0CG01 181 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 AKAIN1P0CW23 69 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 EDNRAP25101 427 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 RIDAP52758 137 aaKnown RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 DUSP8Q13202 625 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 SMCO1Q147U7 214 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 PEA15Q15121 130 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 C21orf62-AS1Q17RA5 79 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 EIF2S3LQ2VIR3 472 aaKnown RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 RAB12Q6IQ22 244 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ABHD17CQ6PCB6 329 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ACOT4Q8N9L9 421 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 CCDC74AQ96AQ1 378 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 MS4A6EQ96DS6 147 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ZNF681Q96N22 645 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 TGM7Q96PF1 710 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 OR2A5Q96R48 311 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 NUDT22Q9BRQ3 303 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 SLC25A18Q9H1K4 315 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 TCF7L1Q9HCS4 588 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ACKR4Q9NPB9 350 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 C20orf141Q9NUB4 165 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ZNF230Q9UIE0 474 aaPredicted RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 PILRAQ9UKJ1 303 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ATXN7L1Q9ULK2 861 aaPredicted RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 ICAM5Q9UMF0 924 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 MRPS2Q9Y399 296 aaKnown RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 PTPRZ1P23471 2315 aaPredicted RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 SCN3AQ9NY46 2000 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 A0A1W2PQM1 296 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 CDX4O14627 284 aaPredicted RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 FCMRO60667 390 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 AIFM1O95831 613 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 OR4E1P0C645 316 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 GLB1P16278 677 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ITPKBP27987 946 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 CD1CP29017 333 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 CMPK1P30085 196 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 EIF2S3P41091 472 aaKnown RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 ZNF136P52737 540 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 KCNAB1Q14722 419 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ARHGAP11BQ3KRB8 267 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 FIGLAQ6QHK4 219 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 OOSP2Q86WS3 158 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 GTPBP8Q8N3Z3 284 aaPredicted RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 POMGNT2Q8NAT1 580 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 OR2L5Q8NG80 312 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 TMEM239Q8WW34 195 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 SLC35A4Q96G79 324 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 EXO5Q9H790 373 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 UQCC1Q9NVA1 299 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 DHCR7Q9UBM7 475 aaKnown RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 METTL1Q9UBP6 276 aaKnown RBP10.06□□□□□ -0.8
CUX1-204ENST00000393824 ZNF281Q9Y2X9 895 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ZNF337Q9Y3M9 751 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ATG4BQ9Y4P1 393 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 ZNF780BQ9Y6R6 833 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 CEP250Q9BV73 2442 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 SEC16AO15027 2179 aa10.06□□□□□ -0.8
CUX1-204ENST00000393824 LILRA5A6NI73 299 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 C1orf196B1AJZ1 125 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 TNFSF14O43557 240 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 ICOSLGO75144 302 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 PPP1R3DO95685 299 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 F12P00748 615 aaPredicted RBP10.05□□□□□ -0.8
CUX1-204ENST00000393824 KLK3P07288 261 aaPredicted RBP10.05□□□□□ -0.8
CUX1-204ENST00000393824 CD63P08962 238 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 ABCD3P28288 659 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 MC3RP41968 323 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 PPM1FP49593 454 aaPredicted RBP10.05□□□□□ -0.8
CUX1-204ENST00000393824 PDX1P52945 283 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 SRSF3P84103 164 aaKnown RBP10.05□□□□□ -0.8
CUX1-204ENST00000393824 SSBP1Q04837 148 aaKnown RBP10.05□□□□□ -0.8
CUX1-204ENST00000393824 DUSP2Q05923 314 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 GGTLC2Q14390 218 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 INPP5JQ15735 1006 aaPredicted RBP10.05□□□□□ -0.8
CUX1-204ENST00000393824 STAC2Q6ZMT1 411 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 WDR88Q6ZMY6 472 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 ABHD13Q7L211 337 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 PRSS41Q7RTY9 318 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 OR2L13Q8N349 312 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 C15orf54Q8N8G6 183 aa10.05□□□□□ -0.8
CUX1-204ENST00000393824 CYB561A3Q8NBI2 242 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms