RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 CHST6Q9GZX3 395 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 FBXO8Q9NRD0 319 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 MON2Q7Z3U7 1717 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 OR5H15A6NDH6 313 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 OR5H14A6NHG9 310 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 OR5H1A6NKK0 313 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 F11P03951 625 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 S100A7P31151 101 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 RACK1P63244 317 aaKnown RBP12.56□□□□□ -0.4
COL4A1-201ENST00000375820 CCDC88AQ3V6T2 1871 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 C4orf17Q53FE4 359 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 OR51F2Q8NH61 342 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 ITPKCQ96DU7 683 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF2Q9BSG1 426 aaPredicted RBP12.56□□□□□ -0.4
COL4A1-201ENST00000375820 B3GAT1Q9P2W7 334 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 ADAM29Q9UKF5 820 aa12.56□□□□□ -0.4
COL4A1-201ENST00000375820 A0A087WZY1 265 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 PLPP1O14494 284 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 OPRM1P35372 400 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 TPMTP51580 245 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 PRR27Q6MZM9 219 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 MFSD12Q6NUT3 480 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 USP51Q70EK9 711 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 SLC37A2Q8TED4 501 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 KIRREL1Q96J84 757 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 MRPS2Q9Y399 296 aaKnown RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 MYO18AQ92614 2054 aaKnown RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 VIRMAQ69YN4 1812 aaKnown RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 TMEM265A0A087WTH1 108 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 ABCD4O14678 606 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 CMPK2Q5EBM0 449 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 OR10G3Q8NGC4 313 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 OR1N1Q8NGS0 311 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 EPHX3Q9H6B9 360 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 RAB22AQ9UL26 194 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 OLFM2O95897 454 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 RPS19P39019 145 aaKnown RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 MRPL19P49406 292 aaKnown RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 RAC1P63000 192 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 ADAM5Q6NVV9 412 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 ORAI1Q96D31 301 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 SLC35A4Q96G79 324 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 PDLIM5Q96HC4 596 aaKnown RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 DIMT1Q9UNQ2 313 aaKnown RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 NPPBP16860 134 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 Q6ZRG5 221 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 GJC3Q8NFK1 279 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 GAB3Q8WWW8 586 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 UBQLN3Q9H347 655 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 ESRP2Q9H6T0 727 aaKnown RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 TBC1D29Q9UFV1 150 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 ING1Q9UK53 422 aaPredicted RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 A0A1B0GX78 115 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 WDR1O75083 606 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 SLC35E2P0CK97 266 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 S100A11P31949 105 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 LPCAT3Q6P1A2 487 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 CD300LGQ6UXG3 332 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 H1FNTQ75WM6 255 aaPredicted RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 TMEM179BQ7Z7N9 219 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 RBFOX1Q9NWB1 397 aaKnown RBP12.55□□□□□ -0.4
COL4A1-201ENST00000375820 MARCH5Q9NX47 278 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 AK3Q9UIJ7 227 aa12.55□□□□□ -0.4
COL4A1-201ENST00000375820 SHISA7A6NL88 538 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 ZBTB42B2RXF5 422 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 ATP6V1G2-DDX39BF2Z307 99 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 DCTN6O00399 190 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 GLCEO94923 617 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 UBL3O95164 117 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 RRASP10301 218 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 RAB13P51153 203 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 OR4F5Q8NH21 305 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 NEURL3Q96EH8 262 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 OR4F4Q96R69 305 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 GON7Q9BXV9 100 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 OR2W5A6NFC9 320 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 TLCD2A6NGC4 264 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 K7EQM0 130 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 HOXC13P31276 330 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 BTG2P78543 158 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 ZNF266Q14584 549 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 ABHD17CQ6PCB6 329 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 SPRED1Q7Z699 444 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 ZFPM2Q8WW38 1151 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 MUTYHQ9UIF7 546 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 SULT1C4O75897 302 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 CD14P08571 375 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 OR10A3P58181 314 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 GGTA1PQ4G0N0 100 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 TMEM102Q8N9M5 508 aaPredicted RBP12.54□□□□□ -0.4
COL4A1-201ENST00000375820 RBPMSQ93062 196 aaKnown RBP12.54□□□□□ -0.4
COL4A1-201ENST00000375820 FYTTD1Q96QD9 318 aaKnown RBP12.54□□□□□ -0.4
COL4A1-201ENST00000375820 MED17Q9NVC6 651 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 EXO1Q9UQ84 846 aaKnown RBP12.54□□□□□ -0.4
COL4A1-201ENST00000375820 SLCO1B1Q9Y6L6 691 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 MYBPHQ13203 477 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 SPATA46Q5T0L3 261 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 ANKRD34AQ69YU3 496 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 CCL4L1Q8NHW4 92 aa12.54□□□□□ -0.4
COL4A1-201ENST00000375820 SLCO4A1Q96BD0 722 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms