RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ICAM5Q9UMF0 924 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PRR36Q9H6K5 1346 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 IGLON5A6NGN9 336 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TSPAN12O95859 305 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ALDOCP09972 364 aaKnown RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TDGF1P13385 188 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 NKX2-1P43699 371 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 HBMQ6B0K9 141 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 DRAM2Q6UX65 266 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 NPSR1Q6W5P4 371 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 AAED1Q7RTV5 226 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 VWA5B2Q8N398 1253 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 LINC00116Q8NCU8 138 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 OR2T11Q8NH01 316 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CCL17Q92583 94 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TMUB1Q9BVT8 246 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ALOXE3Q9BYJ1 711 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 UBQLN3Q9H347 655 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CLMPQ9H6B4 373 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 NYAP2Q9P242 653 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 BTNL2Q9UIR0 455 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ANXA10Q9UJ72 324 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CES1P1Q9UKY3 287 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PROCRQ9UNN8 238 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CHD5Q8TDI0 1954 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM2Q9UHN6 1383 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SLC22A31A6NKX4 558 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ADAM10O14672 748 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CNMDO75829 334 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PPP1R3DO95685 299 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CALCBP10092 127 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PRSS3P35030 304 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 LTBRP36941 435 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TAS2R19P59542 299 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PGM5Q15124 567 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SPANXN5Q5MJ07 72 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 FFAR4Q5NUL3 377 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 DACT2Q5SW24 774 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF648Q5T619 568 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ILDR1Q86SU0 546 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 KMT5CQ86Y97 462 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 C1orf162Q8NEQ5 155 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 OR2D3Q8NGH3 330 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 OR2T35Q8NGX2 323 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 NRIP3Q9NQ35 241 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 NUMBLQ9Y6R0 609 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SPATA31E1Q6ZUB1 1445 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 LOC389332A0A1B0GUA5 103 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TCRBV9S1A1TA0A576 114 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CGB1A6NKQ9 187 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 FIGNL2A6NMB9 653 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 DENRO43583 198 aaKnown RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 GSTZ1O43708 216 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 IGHG1P01857 330 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 INHBBP09529 407 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CD38P28907 300 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 DIO1P49895 249 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 HCCSP53701 268 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 RPS15AP62244 130 aaKnown RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CLN3Q13286 438 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 GPNMBQ14956 572 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 MPEG1Q2M385 716 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM176BQ3YBM2 270 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 OR4F3Q6IEY1 312 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 OLIG3Q7RTU3 272 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CMTM8Q8IZV2 173 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 OR9A1PQ8NGU1 263 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CD200R1Q8TD46 325 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PSMG2Q969U7 264 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PLPPR2Q96GM1 343 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PARP12Q9H0J9 701 aaKnown RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 RAB1BQ9H0U4 201 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TOMM7Q9P0U1 55 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 COX11Q9Y6N1 276 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SPATA31A5Q5VU36 1347 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SPATA31A3Q5VYP0 1347 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 TRAV8-7A0A075B6U6 113 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 EREGO14944 169 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PRAMEF2O60811 474 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SEMA7AO75326 666 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SLITRK3O94933 977 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CSN3P07498 182 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 KCNE1P15382 129 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SDHBP21912 280 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CRHR1P34998 444 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 WDR5P61964 334 aaKnown RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 RPL7AP62424 266 aaKnown RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ABHD18Q0P651 414 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PNLIPRP3Q17RR3 467 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 XKR7Q5GH72 579 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ANKRD34AQ69YU3 496 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 RGS7BPQ6MZT1 257 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 CORO6Q6QEF8 472 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 ZFP62Q8NB50 900 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-202ENST00000375405 OR2AK2Q8NG84 335 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 OR10AG1Q8NH19 301 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 PPTC7Q8NI37 304 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 KCNK12Q9HB15 430 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 THSD1Q9NS62 852 aa4.28□□□□□ -1.72
SCN1A-202ENST00000375405 SLC23A1Q9UHI7 598 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms