RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 EIF3KQ9UBQ5 218 aaKnown RBP19.52■□□□□ 0.71
SHMT1-202ENST00000352886 ZNF69Q9UC07 566 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 U3KQ87 197 aa19.52■□□□□ 0.71
SHMT1-202ENST00000352886 ARPC4-TTLL3A0A0A6YYG9 625 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 CIB4A0PJX0 185 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 SHISA8B8ZZ34 492 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 G3V3Q6 166 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 H3BML4 177 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 DCNP07585 359 aaKnown RBP19.51■□□□□ 0.71
SHMT1-202ENST00000352886 FAUP35544 74 aaKnown RBP19.51■□□□□ 0.71
SHMT1-202ENST00000352886 MAP2K6P52564 334 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 MFSD13AQ14CX5 517 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 PTCRAQ6ISU1 281 aaPredicted RBP19.51■□□□□ 0.71
SHMT1-202ENST00000352886 FAM166AQ6J272 317 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 DNM1P34Q6PK57 102 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 ELF5Q9UKW6 265 aaPredicted RBP19.51■□□□□ 0.71
SHMT1-202ENST00000352886 HRH3Q9Y5N1 445 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 R4GMQ9 66 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 ADAMTS9Q9P2N4 1935 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 PI4KAP42356 2102 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 IGKV1D-43A0A0B4J1Z2 117 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 SRSF10O75494 262 aaKnown RBP19.51■□□□□ 0.71
SHMT1-202ENST00000352886 PTGS2P35354 604 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 SUMO3P55854 103 aaPredicted RBP19.51■□□□□ 0.71
SHMT1-202ENST00000352886 OR4C16Q8NGL9 310 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 DDIT4LQ96D03 193 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 SLC25A44Q96H78 314 aaPredicted RBP19.51■□□□□ 0.71
SHMT1-202ENST00000352886 KCNK17Q96T54 332 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 CHIAQ9BZP6 476 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 KLRF1Q9NZS2 232 aa19.51■□□□□ 0.71
SHMT1-202ENST00000352886 TMEM272A0A1B0GTI8 110 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 MEIS3P1A6NDR6 274 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 TTLL8A6PVC2 850 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 SSTR2P30874 369 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 ZNF81P51508 661 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 HSF1Q00613 529 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 GLT8D1Q68CQ7 371 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 LRFN4Q6PJG9 635 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 MEIOBQ8N635 442 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 C5orf34Q96MH7 638 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 WDR77Q9BQA1 342 aaPredicted RBP19.5■□□□□ 0.71
SHMT1-202ENST00000352886 UTP23Q9BRU9 249 aaKnown RBP19.5■□□□□ 0.71
SHMT1-202ENST00000352886 ATG5Q9H1Y0 275 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 HEXA-AS1Q9H8Q6 139 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 CHST11Q9NPF2 352 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 MGAT4CQ9UBM8 478 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 CSF1P09603 554 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 EMP2P54851 167 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 OR4D10Q8NGI6 311 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 ST7LQ8TDW4 575 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 TAS2R8Q9NYW2 309 aa19.5■□□□□ 0.71
SHMT1-202ENST00000352886 A0A1W2PQM1 296 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 VSTM2BA6NLU5 285 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 CREBL2O60519 120 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 CPN1P15169 458 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 DCDP81605 110 aaKnown RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 GLYATL3Q5SZD4 288 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 ZNF626Q68DY1 528 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 RFPL4BQ6ZWI9 263 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 ZNF680Q8NEM1 530 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 OR13C3Q8NGS6 347 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 MED30Q96HR3 178 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 GPN1Q9HCN4 374 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 PRMT8Q9NR22 394 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 CA10Q9NS85 328 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 HHLA2Q9UM44 414 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 PPIEQ9UNP9 301 aaKnown RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 WDR87Q6ZQQ6 2873 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 A0A1W2PPC1 479 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 PYCARD-AS1I3L0S3 204 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 ZNF208O43345 1280 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 FCER2P06734 321 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 IGFBP3P17936 291 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 FSTP19883 344 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 HTR2CP28335 458 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 MECP2P51608 486 aaKnown RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 SQSTM1Q13501 440 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 RBMS2Q15434 407 aaKnown RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 SIGIRRQ6IA17 410 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 CORO6Q6QEF8 472 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 BPHLQ86WA6 291 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 OR51A2Q8NGJ7 313 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 SLC25A28Q96A46 364 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 CLDN23Q96B33 292 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 G6PC2Q9NQR9 355 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 SLC17A5Q9NRA2 495 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 CGGBP1Q9UFW8 167 aaPredicted RBP19.49■□□□□ 0.71
SHMT1-202ENST00000352886 OR52A1Q9UKL2 312 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 RARRES3Q9UL19 164 aa19.49■□□□□ 0.71
SHMT1-202ENST00000352886 LOC107986453A0A1B0GWG9 222 aa19.48■□□□□ 0.71
SHMT1-202ENST00000352886 CCDC85CA6NKD9 419 aa19.48■□□□□ 0.71
SHMT1-202ENST00000352886 FOSL2P15408 326 aa19.48■□□□□ 0.71
SHMT1-202ENST00000352886 PRSS3P35030 304 aa19.48■□□□□ 0.71
SHMT1-202ENST00000352886 GINS4Q9BRT9 223 aa19.48■□□□□ 0.71
SHMT1-202ENST00000352886 PPP4R1LQ9P1A2 415 aa19.48■□□□□ 0.71
SHMT1-202ENST00000352886 IL5P05113 134 aa19.47■□□□□ 0.71
SHMT1-202ENST00000352886 GTF2F2P13984 249 aa19.47■□□□□ 0.71
SHMT1-202ENST00000352886 EPHA8P29322 1005 aaPredicted RBP19.47■□□□□ 0.71
SHMT1-202ENST00000352886 DNASE1L1P49184 302 aa19.47■□□□□ 0.71
SHMT1-202ENST00000352886 CCL7P80098 99 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms