RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ALDOBP05062 364 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 SULT1A3P0DMM9 295 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 SULT1A4P0DMN0 295 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 BLVRAP53004 296 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 LYSMD4Q5XG99 296 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 SLC25A25Q6KCM7 469 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 LRFN4Q6PJG9 635 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 H1FNTQ75WM6 255 aaPredicted RBP17.34■□□□□ 0.37
COL9A3-201ENST00000343916 DCXRQ7Z4W1 244 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 SLC26A10Q8NG04 563 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 GAL3ST1Q99999 423 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 SEC22CQ9BRL7 303 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 TMEM185BQ9H7F4 350 aa17.34■□□□□ 0.37
COL9A3-201ENST00000343916 XRCC3O43542 346 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 EFNA2O43921 213 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 SELENOPP49908 381 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 GUCA2AQ02747 115 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 HYAL4Q2M3T9 481 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 C2orf76Q3KRA6 126 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 TMEM225Q6GV28 225 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 FGD2Q7Z6J4 655 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 CATSPERDQ86XM0 798 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 PIAS4Q8N2W9 510 aaPredicted RBP17.33■□□□□ 0.37
COL9A3-201ENST00000343916 EID2Q8N6I1 236 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 OR10G3Q8NGC4 313 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 CCDC74BQ96LY2 380 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 C5orf34Q96MH7 638 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 NOX3Q9HBY0 568 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 PCDHGA5Q9Y5G8 931 aa17.33■□□□□ 0.37
COL9A3-201ENST00000343916 OR2J2O76002 312 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 TOXO94900 526 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 ENPP1P22413 925 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 APOBEC1P41238 236 aaKnown RBP17.33■□□□□ 0.36
COL9A3-201ENST00000343916 RAD52P43351 418 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 FOXK1P85037 733 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 HSF1Q00613 529 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 NR0B2Q15466 257 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 C5orf46Q6UWT4 87 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 OR5M1Q8NGP8 315 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 MFSD8Q8NHS3 518 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 FAM3DQ96BQ1 224 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 CCDC120Q96HB5 630 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 RANBP3Q9H6Z4 567 aaPredicted RBP17.33■□□□□ 0.36
COL9A3-201ENST00000343916 PRDM6Q9NQX0 595 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 TAS2R4Q9NYW5 299 aa17.33■□□□□ 0.36
COL9A3-201ENST00000343916 GGT3PA6NGU5 568 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 EIF1AYO14602 144 aaKnown RBP17.32■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF823P16415 610 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 ANXA7P20073 488 aaKnown RBP17.32■□□□□ 0.36
COL9A3-201ENST00000343916 SSTR2P30874 369 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 MRPS10P82664 201 aaKnown RBP17.32■□□□□ 0.36
COL9A3-201ENST00000343916 POU4F3Q15319 338 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 PCGF3Q3KNV8 242 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 ANKRD16Q6P6B7 361 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 LUZP2Q86TE4 346 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.32■□□□□ 0.36
COL9A3-201ENST00000343916 OR51A2Q8NGJ7 313 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 KCNK17Q96T54 332 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 SPSB2Q99619 263 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 CRB3Q9BUF7 120 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 GLTPQ9NZD2 209 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 MEIKINA0A087WXM9 373 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 LOC101059948A0A1B0GTJ6 334 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 NAP1L6A6NFF2 107 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 LDOC1O95751 146 aaPredicted RBP17.32■□□□□ 0.36
COL9A3-201ENST00000343916 AP2S1P53680 142 aaPredicted RBP17.32■□□□□ 0.36
COL9A3-201ENST00000343916 ELFN2Q5R3F8 820 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 OLFML2AQ68BL7 652 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 CPEB2Q7Z5Q1 589 aaKnown RBP17.32■□□□□ 0.36
COL9A3-201ENST00000343916 OR4D10Q8NGI6 311 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 OR1J4Q8NGS1 313 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 DUSP23Q9BVJ7 150 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 DLL4Q9NR61 685 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 PPP4R1LQ9P1A2 415 aa17.32■□□□□ 0.36
COL9A3-201ENST00000343916 CGGBP1Q9UFW8 167 aaPredicted RBP17.32■□□□□ 0.36
COL9A3-201ENST00000343916 CDV3Q9UKY7 258 aaKnown RBP17.32■□□□□ 0.36
COL9A3-201ENST00000343916 TRAV18A0A075B6X5 111 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 VSTM2BA6NLU5 285 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 LMX1BO60663 402 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 MNDAP41218 407 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 RAB11BQ15907 218 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 ZNF385CQ66K41 422 aaPredicted RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 OR2I1PQ8NGU4 316 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 SAP25Q8TEE9 199 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 DDIT4LQ96D03 193 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 DPCDQ9BVM2 203 aaPredicted RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 CDCP1Q9H5V8 836 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 METTL17Q9H7H0 456 aaPredicted RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 HEXA-AS1Q9H8Q6 139 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 CHST11Q9NPF2 352 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 OCIAD1Q9NX40 245 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 MYEF2Q9P2K5 600 aaKnown RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 MYOTQ9UBF9 498 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 CIB4A0PJX0 185 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 SLC17A2O00624 439 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 SHOXO15266 292 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 TPOP07202 933 aa17.31■□□□□ 0.36
COL9A3-201ENST00000343916 EIF1AXP47813 144 aaKnown RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 DAP3P51398 398 aaKnown RBP17.31■□□□□ 0.36
COL9A3-201ENST00000343916 CAMK2DQ13557 499 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms