RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 SOWAHCQ53LP3 525 aaPredicted RBP16.29■□□□□ 0.2
SMAD4-201ENST00000342988 TOR2AQ5JU69 321 aa16.29■□□□□ 0.2
SMAD4-201ENST00000342988 TOMM20LQ6UXN7 152 aa16.29■□□□□ 0.2
SMAD4-201ENST00000342988 GOT1L1Q8NHS2 421 aaPredicted RBP16.29■□□□□ 0.2
SMAD4-201ENST00000342988 POM121L2Q96KW2 1035 aa16.29■□□□□ 0.2
SMAD4-201ENST00000342988 GORASP2Q9H8Y8 452 aa16.29■□□□□ 0.2
SMAD4-201ENST00000342988 KLF7O75840 302 aaPredicted RBP16.29■□□□□ 0.2
SMAD4-201ENST00000342988 IL5P05113 134 aa16.29■□□□□ 0.2
SMAD4-201ENST00000342988 PGGHGQ32M88 737 aa16.29■□□□□ 0.2
SMAD4-201ENST00000342988 TAS2R5Q9NYW4 299 aa16.29■□□□□ 0.2
SMAD4-201ENST00000342988 CLDN24A6NM45 220 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 SPINT3P49223 89 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 LBX2Q6XYB7 198 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 OR13F1Q8NGS4 319 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 KHSRPQ92945 711 aaKnown RBP eCLIP16.28■□□□□ 0.21e-6■■■□□ 18.6
SMAD4-201ENST00000342988 ZDHHC16Q969W1 377 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 RPUSD4Q96CM3 377 aaKnown RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 NME1P15531 152 aaKnown RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 EXOSC2Q13868 293 aaKnown RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 THOC3Q96J01 351 aaKnown RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 CPPED1Q9BRF8 314 aaPredicted RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 C11orf68Q9H3H3 251 aaKnown RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 SPHK2Q9NRA0 654 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 CTSAP10619 480 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 NTSR1P30989 418 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 TMEM184AQ6ZMB5 413 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 SEC11CQ9BY50 192 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 FKBP11Q9NYL4 201 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 KIR2DS5A0A0G2JLQ3 304 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 A0A0G2JNG1 304 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 KIR2DS3K7RE56 304 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 HNRNPA1P09651 372 aaKnown RBP eCLIP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 SDHBP21912 280 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 KIR2DS5Q14953 304 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 PSAPL1Q6NUJ1 521 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 CARFQ8N187 725 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 CLDN22Q8N7P3 220 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 POLR2AP24928 1970 aaKnown RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 AIFM1O95831 613 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 WDR83Q9BRX9 315 aaKnown RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 PRAMEF26H0Y7S4 382 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 M0R1X1 148 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 IL10RAQ13651 578 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 PLK5Q496M5 336 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 MYOFQ9NZM1 2061 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 BCAT2O15382 392 aaPredicted RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 FOXD2O60548 495 aaPredicted RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 PPP1R11O60927 126 aaPredicted RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 DOC2BQ14184 412 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 RNASEKQ6P5S7 137 aaKnown RBP16.28■□□□□ 0.2
SMAD4-201ENST00000342988 NUP37Q8NFH4 326 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 OR2A14Q96R47 310 aa16.28■□□□□ 0.2
SMAD4-201ENST00000342988 Q499Y3 187 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 SPANXN5Q5MJ07 72 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 SFXN4Q6P4A7 337 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 ARHGEF39Q8N4T4 335 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 INPP5KQ9BT40 448 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 CR2P20023 1033 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 CPZQ66K79 652 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 C11orf40Q8WZ69 217 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 OR52D1Q9H346 318 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 COX6CP09669 75 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 PMCHP20382 165 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 Q6ZVL8 140 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 LHX4Q969G2 390 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 GRAMD2BQ96HH9 432 aa16.27■□□□□ 0.2
SMAD4-201ENST00000342988 TRAV20A0A0B4J274 112 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 CDRT15L2A8MXV6 281 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 LMX1BO60663 402 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 STUMQ69YW2 141 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 HSD17B13Q7Z5P4 300 aaPredicted RBP16.27■□□□□ 0.19
SMAD4-201ENST00000342988 OR4C16Q8NGL9 310 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 MOB3AQ96BX8 217 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 ZNF300Q96RE9 604 aaPredicted RBP16.27■□□□□ 0.19
SMAD4-201ENST00000342988 MARCH4Q9P2E8 410 aaPredicted RBP16.27■□□□□ 0.19
SMAD4-201ENST00000342988 A0A1W2PPQ1 181 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 ACOT8O14734 319 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 DRD1P21728 446 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 EDARADDQ8WWZ3 215 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 JAM3Q9BX67 310 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 ABCD3P28288 659 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 GNG4P50150 75 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 TMEM106AQ96A25 262 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 RAB37Q96AX2 223 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 MRPL37Q9BZE1 423 aaKnown RBP16.27■□□□□ 0.19
SMAD4-201ENST00000342988 SLC22A13Q9Y226 551 aa16.27■□□□□ 0.19
SMAD4-201ENST00000342988 DUS4LO95620 317 aaKnown RBP16.26■□□□□ 0.19
SMAD4-201ENST00000342988 LY86O95711 162 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 HIST1H1BP16401 226 aaKnown RBP16.26■□□□□ 0.19
SMAD4-201ENST00000342988 TNFSF8P32971 234 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 UQCC3Q6UW78 93 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 C6orf201Q7Z4U5 140 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 ZNF687Q8N1G0 1237 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 SNX11Q9Y5W9 270 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 DNASE2O00115 360 aaPredicted RBP16.26■□□□□ 0.19
SMAD4-201ENST00000342988 SCG5P05408 212 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 MSS51Q4VC12 460 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 Q6ZN92 141 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 LHFPL2Q6ZUX7 228 aa16.26■□□□□ 0.19
SMAD4-201ENST00000342988 UBQLN3Q9H347 655 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms