RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TMEM231Q9H6L2 316 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 A0A1B0GTI1 187 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 TMEM235A6NFC5 223 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 C11orf98E9PRG8 122 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 FADS1O60427 444 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 PLGP00747 810 aaPredicted RBP20.18■□□□□ 0.82
TRIM28-202ENST00000341753 HFEQ30201 348 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 CASTOR1Q8WTX7 329 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 WDR92Q96MX6 357 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 CCDC3Q9BQI4 270 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 Q9N2J8 555 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 MMP25Q9NPA2 562 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 TAS2R4Q9NYW5 299 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 VSIG4Q9Y279 399 aa20.18■□□□□ 0.82
TRIM28-202ENST00000341753 FANCMQ8IYD8 2048 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 ZNF736B4DX44 427 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-202ENST00000341753 APBB3O95704 486 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 CT45A8P0DMV1 189 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 CT45A9P0DMV2 189 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 EGR4Q05215 589 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 PAN3Q58A45 887 aaKnown RBP20.17■□□□□ 0.82
TRIM28-202ENST00000341753 CT45A2Q5DJT8 189 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 OR51A2Q8NGJ7 313 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 ESRP2Q9H6T0 727 aaKnown RBP20.17■□□□□ 0.82
TRIM28-202ENST00000341753 KLF2Q9Y5W3 355 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-202ENST00000341753 TMEM218A2RU14 115 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 OR6C76A6NM76 312 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 OR2AT4A6NND4 320 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 ZNF432O94892 652 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 OR2F2O95006 317 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 CYB5AP00167 134 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 DCNP07585 359 aaKnown RBP20.17■□□□□ 0.82
TRIM28-202ENST00000341753 ZNF735P0CB33 412 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 CASRP41180 1078 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 BTG2P78543 158 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 RASGEF1BQ0VAM2 473 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 OR2F1Q13607 317 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 PAQR8Q8TEZ7 354 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 HOXB13Q92826 284 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-202ENST00000341753 GAS2L1Q99501 681 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-202ENST00000341753 CMKLR1Q99788 373 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 USB1Q9BQ65 265 aaKnown RBP20.17■□□□□ 0.82
TRIM28-202ENST00000341753 KLK13Q9UKR3 277 aa20.17■□□□□ 0.82
TRIM28-202ENST00000341753 TDRD6O60522 2096 aaKnown RBP20.16■□□□□ 0.82
TRIM28-202ENST00000341753 A0A0A6YYC8 382 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-202ENST00000341753 EEF1E1-BLOC1S5C9J1V9 151 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 I3L1I5 382 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-202ENST00000341753 MAOBP27338 520 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 SKP1P63208 163 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 MFGE8Q08431 387 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-202ENST00000341753 ALG11Q2TAA5 492 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 KCTD9Q7L273 389 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 FAM131CQ96AQ9 280 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 PIGMQ9H3S5 423 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 GAREM1Q9H706 876 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 MRPS18BQ9Y676 258 aaKnown RBP20.16■□□□□ 0.82
TRIM28-202ENST00000341753 OR14I1A6ND48 311 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 C17orf51A8MQB3 221 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 SLC22A6Q4U2R8 563 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 TMEM71Q6P5X7 295 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 TMEM229BQ8NBD8 167 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 ACBD4Q8NC06 268 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 C16orf52Q8NHV5 167 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 PHOSPHO1Q8TCT1 267 aa20.16■□□□□ 0.82
TRIM28-202ENST00000341753 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.16■□□□□ 0.82
TRIM28-202ENST00000341753 SCAND1P57086 179 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 RAB38P57729 211 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 PPP1R1AQ13522 171 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 CORO6Q6QEF8 472 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 ACOT7LQ6ZUV0 252 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 FAM174AQ8TBP5 190 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 C2CD4CQ8TF44 421 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 SLC25A21Q9BQT8 299 aaPredicted RBP20.15■□□□□ 0.82
TRIM28-202ENST00000341753 MBD2Q9UBB5 411 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 SULT2B1O00204 365 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 ACTL6AO96019 429 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 PVALBP20472 110 aaPredicted RBP20.15■□□□□ 0.82
TRIM28-202ENST00000341753 B2MP61769 119 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 SPOCK1Q08629 439 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 TMEM225Q6GV28 225 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 ATG4DQ86TL0 474 aaPredicted RBP20.15■□□□□ 0.82
TRIM28-202ENST00000341753 BAHD1Q8TBE0 780 aaPredicted RBP20.15■□□□□ 0.82
TRIM28-202ENST00000341753 SLC41A2Q96JW4 573 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 CST11Q9H112 138 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 FAM60AQ9NP50 221 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 EPHA6Q9UF33 1036 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 NDRG3Q9UGV2 375 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 TMED7Q9Y3B3 224 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 NUP210LQ5VU65 1888 aa20.15■□□□□ 0.82
TRIM28-202ENST00000341753 SPARCP09486 303 aa20.14■□□□□ 0.82
TRIM28-202ENST00000341753 HTR2CP28335 458 aa20.14■□□□□ 0.82
TRIM28-202ENST00000341753 EGR3Q06889 387 aa20.14■□□□□ 0.82
TRIM28-202ENST00000341753 ZFP82Q8N141 532 aa20.14■□□□□ 0.82
TRIM28-202ENST00000341753 JAGN1Q8N5M9 183 aa20.14■□□□□ 0.82
TRIM28-202ENST00000341753 CMBLQ96DG6 245 aa20.14■□□□□ 0.82
TRIM28-202ENST00000341753 S1PR5Q9H228 398 aa20.14■□□□□ 0.82
TRIM28-202ENST00000341753 HRASLS2Q9NWW9 162 aa20.14■□□□□ 0.82
TRIM28-202ENST00000341753 DHDHQ9UQ10 334 aa20.14■□□□□ 0.82
TRIM28-202ENST00000341753 CPED1A4D0V7 1026 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 LINC01387J3KSC0 135 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms