RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 MAGEB1P43366 347 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 KIR3DL2P43630 455 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 CLDN12P56749 244 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SOX8P57073 446 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SMIM11AP58511 58 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 RPS23P62266 143 aaKnown RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SLBPQ14493 270 aaKnown RBP eCLIP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 NKAPLQ5M9Q1 402 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 NKAIN2Q5VXU1 208 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ADAM5Q6NVV9 412 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 TNFAIP8L2Q6P589 184 aaPredicted RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 CLEC9AQ6UXN8 241 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 COMMD6Q7Z4G1 85 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 BAP18Q8IXM2 172 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 BEST3Q8N1M1 668 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ZSCAN4Q8NAM6 433 aaPredicted RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 STEAP2Q8NFT2 490 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SYNPRQ8TBG9 265 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 TMED6Q8WW62 240 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SAT2Q96F10 170 aaPredicted RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 PELI1Q96FA3 418 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 LYSMD1Q96S90 227 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SLITRK2Q9H156 845 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 XKR8Q9H6D3 395 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 VSX1Q9NZR4 365 aaPredicted RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 KCNG2Q9UJ96 466 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 MMP17Q9ULZ9 603 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SH2B3Q9UQQ2 575 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 IGLV3-16A0A075B6K0 115 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 IGHV1OR15-9A0A0B4J2B8 117 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 MAGEB4O15481 346 aaPredicted RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 XRCC3O43542 346 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 DOK2O60496 412 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 IL2RAP01589 272 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ARG1P05089 322 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 CD2P06729 351 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 PGAM2P15259 253 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 C5AR1P21730 350 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ID4P47928 161 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 PCBP4P57723 403 aaKnown RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 DHRS2Q13268 280 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 RUNX3Q13761 415 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 CDK5R1Q15078 307 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 NDUFAF6Q330K2 333 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 AKIRIN2Q53H80 203 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 CDCP2Q5VXM1 449 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 PMS2CLQ68D20 193 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 TCEAL6Q6IPX3 200 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 CXXC5Q7LFL8 322 aaKnown RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 OR10AD1Q8NGE0 317 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 OR10D4PQ8NGN7 298 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 OR1J2Q8NGS2 313 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 RNASE11Q8TAA1 199 aaKnown RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ZNF385AQ96PM9 386 aaKnown RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 INPP5EQ9NRR6 644 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 DEC1Q9P2X7 70 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ICAM5Q9UMF0 924 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 CACNA1EQ15878 2313 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 PRRC2CQ9Y520 2896 aaKnown RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 MSGN1A6NI15 193 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 OR1F1O43749 312 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 MT-ND5P03915 603 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ATXN8OSP0DMR3 200 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ALPPL2P10696 532 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 CLUP10909 449 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 RAB4AP20338 218 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 CFPP27918 469 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 IL2RGP31785 369 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SULT1A1P50225 295 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 RPS13P62277 151 aaKnown RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 GUCA2AQ02747 115 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 TSTA3Q13630 321 aaPredicted RBP5.04□□□□□ -1.6
CSDE1-202ENST00000339438 RAB35Q15286 201 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 NDUFAF7Q7L592 441 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 FRMD1Q8N878 549 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 BHLHE23Q8NDY6 225 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SECTM1Q8WVN6 248 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 PPP1R16AQ96I34 528 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 KIRREL1Q96J84 757 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 SAMD8Q96LT4 415 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ZPBPQ9BS86 351 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 TMEM208Q9BTX3 173 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 GPR61Q9BZJ8 451 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 FOXQ1Q9C009 403 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 ATG10Q9H0Y0 220 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 TMEM74BQ9NUR3 256 aa5.04□□□□□ -1.6
CSDE1-202ENST00000339438 A0A1W2PPE2 198 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 CCSO14618 274 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 PLRG1O43660 514 aaKnown RBP5.03□□□□□ -1.6
CSDE1-202ENST00000339438 SBK2P0C263 348 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 GZMBP10144 247 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 NME2P22392 152 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 ZBTB25P24278 435 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 RBX1P62877 108 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 CNTN1Q12860 1018 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 FHL1Q13642 323 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 PCGF3Q3KNV8 242 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 TMEM69Q5SWH9 247 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 SLC23A3Q6PIS1 610 aa5.03□□□□□ -1.6
CSDE1-202ENST00000339438 C1orf210Q8IVY1 113 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms