RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PSMB10P40306 273 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 NCS1P62166 190 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 PSG6Q00889 435 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 CFHR1Q03591 330 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 BCL2A1Q16548 175 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 TRAPPC6BQ86SZ2 158 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 OR11G2Q8NGC1 345 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 LIPHQ8WWY8 451 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 ZNF285Q96NJ3 590 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 ETAA1Q9NY74 926 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 RAB3DO95716 219 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 VAMP1P23763 118 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 SKP2Q13309 424 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 TRAT1Q6PIZ9 186 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 LRRC18Q8N456 261 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 ARHGEF39Q8N4T4 335 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 NKX3-1Q99801 234 aaPredicted RBP12.32□□□□□ -0.44
LDLR-201ENST00000252444 SLC35F4A4IF30 521 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 GYPBP06028 91 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 RBP2P50120 134 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 LSRQ86X29 649 aaPredicted RBP12.32□□□□□ -0.44
LDLR-201ENST00000252444 ZFP41Q8N8Y5 198 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 FOXB1Q99853 325 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 UBE2J1Q9Y385 318 aaPredicted RBP12.32□□□□□ -0.44
LDLR-201ENST00000252444 G3V3Y1 287 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 LYRM1O43325 122 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 TK1P04183 234 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 LIFP15018 202 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 GNRHRP30968 328 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 CA5AP35218 305 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 MESP2Q0VG99 397 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 MSMO1Q15800 293 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 SFXN4Q6P4A7 337 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 PLXDC2Q6UX71 529 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 OR2W3Q7Z3T1 314 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 SYT9Q86SS6 491 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 ASB13Q8WXK3 278 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 C22orf15Q8WYQ4 148 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 RELTQ969Z4 430 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 DHRS1Q96LJ7 313 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 NPAP1Q9NZP6 1156 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 PMF1-BGLAPU3KQ54 211 aa12.32□□□□□ -0.44
LDLR-201ENST00000252444 AQP7P3A6NL99 342 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 WDR1O75083 606 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 ZNF93P35789 620 aaPredicted RBP12.31□□□□□ -0.44
LDLR-201ENST00000252444 MDGA2Q7Z553 956 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 ZNF687Q8N1G0 1237 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 OR2M3Q8NG83 312 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 OR1M1Q8NGA1 313 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 AK6Q9Y3D8 172 aaKnown RBP12.31□□□□□ -0.44
LDLR-201ENST00000252444 PLPP3O14495 311 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 SSX6Q7RTT6 188 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 TMPRSS9Q7Z410 1059 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 OTOSQ8NHW6 89 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 SLCO1C1Q9NYB5 712 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 TRPM6Q9BX84 2022 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 TERTO14746 1132 aaKnown RBP12.31□□□□□ -0.44
LDLR-201ENST00000252444 CD1AP06126 327 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 DGLUCYQ7Z3D6 616 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 GPR32P1Q8NGA4 272 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 TMEM106AQ96A25 262 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 RRNAD1Q96FB5 475 aaKnown RBP12.31□□□□□ -0.44
LDLR-201ENST00000252444 OR8B4Q96RC9 309 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 NUDT16L1Q9BRJ7 211 aaKnown RBP12.31□□□□□ -0.44
LDLR-201ENST00000252444 APMAPQ9HDC9 416 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 ZNF816-ZNF321PA0A0X1KG74 233 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 TRIM64CA6NLI5 447 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 NRG2O14511 850 aaPredicted RBP12.31□□□□□ -0.44
LDLR-201ENST00000252444 AMY2AP04746 511 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 CST2P09228 141 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 LIPAP38571 399 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 CDK5R1Q15078 307 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 NOXA1Q86UR1 476 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 ZNF615Q8N8J6 731 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 OR51E2Q9H255 320 aa12.31□□□□□ -0.44
LDLR-201ENST00000252444 IGKV1-8A0A0C4DH67 115 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 NPIPB13A6NJU9 1138 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 NPIPB4C9JG80 1138 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 GLAP06280 429 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 CRHP06850 196 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 SP1P08047 785 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 CDC20Q12834 499 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 GMPPAQ96IJ6 420 aaPredicted RBP12.3□□□□□ -0.44
LDLR-201ENST00000252444 CMSS1Q9BQ75 279 aaKnown RBP12.3□□□□□ -0.44
LDLR-201ENST00000252444 CACNG6Q9BXT2 260 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 LIN28AQ9H9Z2 209 aaKnown RBP12.3□□□□□ -0.44
LDLR-201ENST00000252444 MRPS18CQ9Y3D5 142 aaKnown RBP12.3□□□□□ -0.44
LDLR-201ENST00000252444 OR2AT4A6NND4 320 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 CT62P0C5K7 136 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 HOXB3P14651 431 aaPredicted RBP12.3□□□□□ -0.44
LDLR-201ENST00000252444 SRMP19623 302 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 CASP3P42574 277 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 MECP2P51608 486 aaKnown RBP12.3□□□□□ -0.44
LDLR-201ENST00000252444 PRSS41Q7RTY9 318 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 ZNF709Q8N972 641 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 TP63Q9H3D4 680 aaPredicted RBP12.3□□□□□ -0.44
LDLR-201ENST00000252444 LANCL2Q9NS86 450 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 HRH3Q9Y5N1 445 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 FUT6P51993 359 aa12.3□□□□□ -0.44
LDLR-201ENST00000252444 PPP1CAP62136 330 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms