RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZNF587Q96SQ5 575 aaPredicted RBP9.59□□□□□ -0.87
USP28-201ENST00000003302 VSIG4Q9Y279 399 aa9.59□□□□□ -0.87
USP28-201ENST00000003302 RNF215Q9Y6U7 377 aa9.59□□□□□ -0.87
USP28-201ENST00000003302 ZNF749O43361 778 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 PLATP00750 562 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 ADAM8P78325 824 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 ATPAF1Q5TC12 328 aaPredicted RBP9.58□□□□□ -0.88
USP28-201ENST00000003302 TMEM225Q6GV28 225 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 WBP2NLQ6ICG8 309 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 EXO5Q9H790 373 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 MRTO4Q9UKD2 239 aaKnown RBP9.58□□□□□ -0.88
USP28-201ENST00000003302 PRELID1Q9Y255 219 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 VDAC3Q9Y277 283 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 DIDO1Q9BTC0 2240 aaKnown RBP9.58□□□□□ -0.88
USP28-201ENST00000003302 FREM1Q5H8C1 2179 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 APOC3P02656 99 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 BGLAPP02818 100 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 GIPP09681 153 aaPredicted RBP9.58□□□□□ -0.88
USP28-201ENST00000003302 MPGP29372 298 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 ATP1B3P54709 279 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 IGLV3-21P80748 117 aaPredicted RBP9.58□□□□□ -0.88
USP28-201ENST00000003302 STEAP1BQ6NZ63 245 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 C3orf33Q6P1S2 294 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 C11orf88Q6PI97 169 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 ARSKQ6UWY0 536 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 TMEM200AQ86VY9 491 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 SLC38A9Q8NBW4 561 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 ZNF721Q8TF20 911 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 CTSFQ9UBX1 484 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 IGLV1-36A0A0B4J1U3 117 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 AK1P00568 194 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 CPN1P15169 458 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 UNC119Q13432 240 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 CCINQ13939 588 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 TMEM88Q6PEY1 159 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 UNQ6126/PRO20091Q6UXV3 157 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 GABRG1Q8N1C3 465 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 MARC2Q969Z3 335 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 MFRPQ9BY79 579 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 EVA1AQ9H8M9 152 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 ZNF319Q9P2F9 582 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 P2RY10O00398 339 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 ZNHIT1O43257 154 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 RAMP1O60894 148 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 KCNJ13O60928 360 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 OR4E1P0C645 316 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 PRPS1P60891 318 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 DHODHQ02127 395 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 SLC17A1Q14916 467 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 RBMS2Q15434 407 aaKnown RBP9.58□□□□□ -0.88
USP28-201ENST00000003302 TSSK4Q6SA08 328 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 SPICQ8N5J4 248 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 JAGN1Q8N5M9 183 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 ZNF454Q8N9F8 522 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 MAFIPQ8WZ33 124 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 SLC39A7Q92504 469 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 DCBLD2Q96PD2 775 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 CST11Q9H112 138 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 UBQLN4Q9NRR5 601 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 NUP50Q9UKX7 468 aa9.58□□□□□ -0.88
USP28-201ENST00000003302 ZNF814B7Z6K7 855 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 MASP2O00187 686 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 TNFP01375 233 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 CSF2RBP32927 897 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 LGALS3BPQ08380 585 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 DHRS2Q13268 280 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 GSG1LQ6UXU4 331 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 OR52N4Q8NGI2 321 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 GPR148Q8TDV2 347 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 AKIRIN1Q9H9L7 192 aaPredicted RBP9.57□□□□□ -0.88
USP28-201ENST00000003302 ZNF581Q9P0T4 197 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 A8MXK9 166 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 H3BMH7 237 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 H3BML4 177 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 PDCD5O14737 125 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 IGKV3-11P04433 115 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 AMY2AP04746 511 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 LUMP51884 338 aaPredicted RBP9.57□□□□□ -0.88
USP28-201ENST00000003302 CAPZA1P52907 286 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 BAMBIQ13145 260 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 PHOSPHO2Q8TCD6 241 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 SLC25A44Q96H78 314 aaPredicted RBP9.57□□□□□ -0.88
USP28-201ENST00000003302 OR8B4Q96RC9 309 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 ACTR6Q9GZN1 396 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 MFFQ9GZY8 342 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 BARX1Q9HBU1 254 aaPredicted RBP9.57□□□□□ -0.88
USP28-201ENST00000003302 APMAPQ9HDC9 416 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 RNF222A6NCQ9 220 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 OR2AT4A6NND4 320 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 PTGS2P35354 604 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 SLC35D3Q5M8T2 416 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 TMPRSS9Q7Z410 1059 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 FAM220AQ7Z4H9 259 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 TMEM104Q8NE00 496 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 OR6N1Q8NGY5 312 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 ADAT3Q96EY9 351 aaPredicted RBP9.57□□□□□ -0.88
USP28-201ENST00000003302 ADAM19Q9H013 955 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 MSRAQ9UJ68 235 aa9.57□□□□□ -0.88
USP28-201ENST00000003302 SCDO00767 359 aa9.56□□□□□ -0.88
USP28-201ENST00000003302 EFNA2O43921 213 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms