RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RBMXP38159 391 aaKnown RBP16.4■□□□□ 0.22
CLN3-262ENST00000637699 PCBP3P57721 371 aaKnown RBP16.4■□□□□ 0.22
CLN3-262ENST00000637699 BAMBIQ13145 260 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 PTOV1Q86YD1 416 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 C11orf65Q8NCR3 313 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 KLF14Q8TD94 323 aaPredicted RBP16.4■□□□□ 0.22
CLN3-262ENST00000637699 POP5Q969H6 163 aaKnown RBP16.4■□□□□ 0.22
CLN3-262ENST00000637699 C1orf147Q96MC9 270 aaPredicted RBP16.4■□□□□ 0.22
CLN3-262ENST00000637699 CPPED1Q9BRF8 314 aaPredicted RBP16.4■□□□□ 0.22
CLN3-262ENST00000637699 VIPAS39Q9H9C1 493 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 NPHS2Q9NP85 383 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 PURGQ9UJV8 347 aaKnown RBP16.4■□□□□ 0.22
CLN3-262ENST00000637699 NPTNQ9Y639 398 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 AUP1Q9Y679 476 aa16.4■□□□□ 0.22
CLN3-262ENST00000637699 HMGB1P1B2RPK0 211 aaPredicted RBP16.39■□□□□ 0.21
CLN3-262ENST00000637699 GDI2P50395 445 aaKnown RBP16.39■□□□□ 0.21
CLN3-262ENST00000637699 UGT2B15P54855 530 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 RPL18Q07020 188 aaKnown RBP16.39■□□□□ 0.21
CLN3-262ENST00000637699 SGCAQ16586 387 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 CYP51A1Q16850 503 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 AGKQ53H12 422 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 KLF17Q5JT82 389 aaPredicted RBP16.39■□□□□ 0.21
CLN3-262ENST00000637699 MBNL2Q5VZF2 373 aaKnown RBP16.39■□□□□ 0.21
CLN3-262ENST00000637699 UNQ6126/PRO20091Q6UXV3 157 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 ABHD4Q8TB40 342 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 DYDC1Q8WWB3 177 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 ASB10Q8WXI3 467 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 TAF15Q92804 592 aaKnown RBP eCLIP16.39■□□□□ 0.21
CLN3-262ENST00000637699 MPP4Q96JB8 637 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 SEPHS2Q99611 448 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 GPA33Q99795 319 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 SLC19A3Q9BZV2 496 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 MSL2Q9HCI7 577 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 MEPEQ9NQ76 525 aaPredicted RBP16.39■□□□□ 0.21
CLN3-262ENST00000637699 CYSLTR2Q9NS75 346 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 INTS9Q9NV88 658 aaKnown RBP16.39■□□□□ 0.21
CLN3-262ENST00000637699 PLEK2Q9NYT0 353 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 EGFL7Q9UHF1 273 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 UGT2A1Q9Y4X1 527 aa16.39■□□□□ 0.21
CLN3-262ENST00000637699 TRAPPC2LH3BP13 241 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 MGRN1O60291 552 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 ERVK-25P63136 954 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 MRPS34P82930 218 aaKnown RBP16.38■□□□□ 0.21
CLN3-262ENST00000637699 PSG4Q00888 419 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 ZNF154Q13106 437 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 TUSC1Q2TAM9 212 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 RUNDC3AQ59EK9 446 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 C10orf128Q5T292 105 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 DLEU7Q6UYE1 221 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 RFPL4BQ6ZWI9 263 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 NSMAFQ92636 917 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 NABP1Q96AH0 204 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 ZNF48Q96MX3 618 aaPredicted RBP16.38■□□□□ 0.21
CLN3-262ENST00000637699 CCDC28BQ9BUN5 200 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 ZNF426Q9BUY5 554 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 ZDHHC8Q9ULC8 765 aa16.38■□□□□ 0.21
CLN3-262ENST00000637699 CMYA5Q8N3K9 4069 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 CENPBD1B2RD01 187 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 SASH3O75995 380 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 NGFP01138 241 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 IGHV2-70P01814 119 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 IGHMP01871 453 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 ADH4P08319 380 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 FUT1P19526 365 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 CD247P20963 164 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 LIPAP38571 399 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 AQP2P41181 271 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 DAP3P51398 398 aaKnown RBP16.37■□□□□ 0.21
CLN3-262ENST00000637699 ZNF133P52736 654 aaPredicted RBP16.37■□□□□ 0.21
CLN3-262ENST00000637699 SEC61A1P61619 476 aaKnown RBP16.37■□□□□ 0.21
CLN3-262ENST00000637699 PPP1CBP62140 327 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 TNFAIP6P98066 277 aaPredicted RBP16.37■□□□□ 0.21
CLN3-262ENST00000637699 FMODQ06828 376 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 DIRC2Q96SL1 478 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 PRSS27Q9BQR3 290 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 ZMAT3Q9HA38 289 aaKnown RBP16.37■□□□□ 0.21
CLN3-262ENST00000637699 INIPQ9NRY2 104 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 ARGLU1Q9NWB6 273 aaPredicted RBP16.37■□□□□ 0.21
CLN3-262ENST00000637699 KLHL21Q9UJP4 597 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 TANC2Q9HCD6 1990 aa16.37■□□□□ 0.21
CLN3-262ENST00000637699 IGKV1D-43A0A0B4J1Z2 117 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 CD55P08174 381 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 CD47Q08722 323 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 HDDC2Q7Z4H3 204 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 KLHL36Q8N4N3 616 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 MOSPD2Q8NHP6 518 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 PFN4Q8NHR9 129 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 SLC26A7Q8TE54 656 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 HDAC2Q92769 488 aaKnown RBP16.36■□□□□ 0.21
CLN3-262ENST00000637699 SLC25A28Q96A46 364 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 MRI1Q9BV20 369 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 NANOGQ9H9S0 305 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 PATZ1Q9HBE1 687 aaKnown RBP16.36■□□□□ 0.21
CLN3-262ENST00000637699 TMEM106BQ9NUM4 274 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 INSIG2Q9Y5U4 225 aa16.36■□□□□ 0.21
CLN3-262ENST00000637699 POM121CA8CG34 1229 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 TIMM8AO60220 97 aaPredicted RBP16.35■□□□□ 0.21
CLN3-262ENST00000637699 OR7A10O76100 309 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 MT-ND1P03886 318 aa16.35■□□□□ 0.21
CLN3-262ENST00000637699 RNASE1P07998 156 aaKnown RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms