RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ARF1P84077 181 aaKnown RBP8.63□□□□□ -1.03
CLN3-261ENST00000637686 MELKQ14680 651 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 CEACAM16Q2WEN9 425 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 HIKESHIQ53FT3 197 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 MESTQ5EB52 335 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 NCMAPQ5T1S8 102 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 CXXC5Q7LFL8 322 aaKnown RBP8.63□□□□□ -1.03
CLN3-261ENST00000637686 JAZF1Q86VZ6 243 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 C17orf78Q8N4C9 275 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 NPEPL1Q8NDH3 523 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 OR6N1Q8NGY5 312 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 BCL2L2Q92843 193 aaPredicted RBP8.63□□□□□ -1.03
CLN3-261ENST00000637686 ZNF837Q96EG3 531 aaPredicted RBP8.63□□□□□ -1.03
CLN3-261ENST00000637686 SLC25A44Q96H78 314 aaPredicted RBP8.63□□□□□ -1.03
CLN3-261ENST00000637686 LRR1Q96L50 414 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 Q96M85 177 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 C1QTNF6Q9BXI9 259 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 DUSP21Q9H596 190 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 CRLF2Q9HC73 371 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 NGBQ9NPG2 151 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 HINT3Q9NQE9 182 aaKnown RBP8.63□□□□□ -1.03
CLN3-261ENST00000637686 SLC17A5Q9NRA2 495 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 NPAP1Q9NZP6 1156 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 WARS2Q9UGM6 360 aaKnown RBP8.63□□□□□ -1.03
CLN3-261ENST00000637686 IL20RAQ9UHF4 553 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 ZNF346Q9UL40 294 aaKnown RBP8.63□□□□□ -1.03
CLN3-261ENST00000637686 MOKQ9UQ07 419 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 TPRKBQ9Y3C4 175 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 ADAM18Q9Y3Q7 739 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 RPL36Q9Y3U8 105 aaKnown RBP8.63□□□□□ -1.03
CLN3-261ENST00000637686 FKBP7Q9Y680 259 aa8.63□□□□□ -1.03
CLN3-261ENST00000637686 TACC2O95359 2948 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 PDZD2O15018 2839 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 CSMD1Q96PZ7 3565 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 TEX13CA0A0J9YWL9 993 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 MAGEA13PA6NCF6 341 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 EFCAB10A6NFE3 127 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 SLC1A7O00341 560 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 IGHG1P01857 330 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 SLC2A5P22732 501 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 CRABP1P29762 137 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 HTR1FP30939 366 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 HOXC12P31275 282 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 SLC15A1P46059 708 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 CSNK1A1P48729 337 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 ZNF83P51522 516 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 SLC35A2P78381 396 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 RUNX1T1Q06455 604 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 BSPH1Q075Z2 132 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.62□□□□□ -1.03
CLN3-261ENST00000637686 POU4F2Q12837 409 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 CRMP1Q14194 572 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 GGTLC2Q14390 218 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 TBRG1Q3YBR2 411 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 LCN1P1Q5VSP4 162 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 RNLSQ5VYX0 342 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 LAIR2Q6ISS4 152 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 ANKRD16Q6P6B7 361 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 DNM1P34Q6PK57 102 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 SSX8Q7RTT4 187 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 ZBTB46Q86UZ6 589 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 IGFN1Q86VF2 1251 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 EGFL6Q8IUX8 553 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 SLC37A3Q8NCC5 494 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 OR52E2Q8NGJ4 325 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 OR2T4Q8NH00 348 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 TMEM54Q969K7 222 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 ZNF582Q96NG8 517 aaPredicted RBP8.62□□□□□ -1.03
CLN3-261ENST00000637686 IL4I1Q96RQ9 567 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 KCNK17Q96T54 332 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 JAM3Q9BX67 310 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 MRPL13Q9BYD1 178 aaKnown RBP8.62□□□□□ -1.03
CLN3-261ENST00000637686 ULBP2Q9BZM5 246 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 RACGAP1Q9H0H5 632 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 ESRP2Q9H6T0 727 aaKnown RBP8.62□□□□□ -1.03
CLN3-261ENST00000637686 UBTD1Q9HAC8 227 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 B3GAT2Q9NPZ5 323 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 FKBP14Q9NWM8 211 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 H2AFY2Q9P0M6 372 aaPredicted RBP8.62□□□□□ -1.03
CLN3-261ENST00000637686 PSORS1C1Q9UIG5 152 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 ST6GALNAC2Q9UJ37 374 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 ITGB1BP2Q9UKP3 347 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 PLEKHA6Q9Y2H5 1048 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 AMDHD2Q9Y303 409 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 ABCA4P78363 2273 aa8.62□□□□□ -1.03
CLN3-261ENST00000637686 HRNRQ86YZ3 2850 aaPredicted RBP8.62□□□□□ -1.03
CLN3-261ENST00000637686 SLC22A23A1A5C7 686 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 TRIM64CA6NLI5 447 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 ZNF99A8MXY4 864 aaPredicted RBP8.61□□□□□ -1.03
CLN3-261ENST00000637686 M0R1B8 84 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 TRMUO75648 421 aaKnown RBP8.61□□□□□ -1.03
CLN3-261ENST00000637686 SEC14L2O76054 403 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 WNT11O96014 354 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 CD3EP07766 207 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 LYNP07948 512 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 PGA4P0DJD7 388 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 PGA3P0DJD8 388 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 ACVR1BP36896 505 aa8.61□□□□□ -1.03
CLN3-261ENST00000637686 CDKN2AP42771 156 aaKnown RBP8.61□□□□□ -1.03
CLN3-261ENST00000637686 SH3BGRP55822 239 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms