RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 CALCBP10092 127 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 HOXB8P17481 243 aaPredicted RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 ATP6V1C1P21283 382 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 FMO3P31513 532 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 SHMT2P34897 504 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 ARL2P36404 184 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 LONP1P36776 959 aaKnown RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 SLC26A3P40879 764 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 LEPP41159 167 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CSKP41240 450 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 NAMPTP43490 491 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 VDAC2P45880 294 aaPredicted RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 RPS9P46781 194 aaKnown RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CAMLGP49069 296 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 PPOXP50336 477 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 GPM6AP51674 278 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 PKNOX1P55347 436 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 GFERP55789 205 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 MYL6P60660 151 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 PFN3P60673 137 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 RAP1BP61224 184 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 HERVK_113P61574 105 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 RPS24P62847 133 aaKnown RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 EWSR1Q01844 656 aaKnown RBP eCLIP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 FUT7Q11130 342 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 GRB7Q14451 532 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 MXD4Q14582 209 aaPredicted RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 LAGE3Q14657 143 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 C16orf72Q14CZ0 275 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 IRF4Q15306 451 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 NRF1Q16656 503 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 GOLGA7BQ2TAP0 167 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 DEFB133Q30KQ1 61 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 DEFB110Q30KQ9 67 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 LINC00303Q3SY05 128 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 HSP90AA4PQ58FG1 418 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 FAM120AOSQ5T036 256 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 TPGS2Q68CL5 300 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 TMEM215Q68D42 235 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 TIGD3Q6B0B8 471 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 PVRIGQ6DKI7 326 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 ASPHD2Q6ICH7 369 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 OR52W1Q6IF63 320 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CENPPQ6IPU0 288 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 FAHD2BQ6P2I3 314 aaPredicted RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 Q6P435 159 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 NIPAL3Q6P499 406 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 C22orf39Q6P5X5 142 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 FAM199XQ6PEV8 388 aaPredicted RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CNSTQ6PJW8 725 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 WDR74Q6RFH5 385 aaPredicted RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 C6orf89Q6UWU4 347 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 ARSKQ6UWY0 536 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 UNQ9370/PRO34162Q6UXP9 181 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 TMIGD1Q6UXZ0 262 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 HSDL2Q6YN16 418 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CERS6Q6ZMG9 384 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 ACOT7LQ6ZUV0 252 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 EFL1Q7Z2Z2 1120 aaKnown RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 LHFPL4Q7Z7J7 247 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 LINC01551Q86U37 167 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 TAC4Q86UU9 113 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF429Q86V71 674 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 TPRA1Q86W33 373 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 TMEM25Q86YD3 366 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CCDC50Q8IVM0 306 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 MFSD6LQ8IWD5 586 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CENPLQ8N0S6 344 aaPredicted RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 LINC01561Q8N1V8 128 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 STK40Q8N2I9 435 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 PNKDQ8N490 385 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 PDCL2Q8N4E4 241 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 HDDC3Q8N4P3 179 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 C12orf29Q8N999 325 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CCDC71LQ8N9Z2 235 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 MINDY2Q8NBR6 621 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF540Q8NDQ6 660 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 DENND6BQ8NEG7 585 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CCL4L1Q8NHW4 92 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 NEIL3Q8TAT5 605 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 FBXO30Q8TB52 745 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 SLC2A14Q8TDB8 520 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 PAQR8Q8TEZ7 354 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 C7orf33Q8WU49 177 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 TMEM158Q8WZ71 300 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 ST8SIA1Q92185 356 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 MRPS31Q92665 395 aaKnown RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 RPL3LQ92901 407 aaKnown RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 MYDGFQ969H8 173 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 FBXO32Q969P5 355 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CLDN23Q96B33 292 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 C14orf79Q96F83 325 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 FAHD2AQ96GK7 314 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CELF6Q96J87 481 aaKnown RBP0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 SENP8Q96LD8 212 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 KCNA7Q96RP8 456 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 KCNK16Q96T55 309 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 PKMYT1Q99640 499 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 CTRCQ99895 268 aa0.71□□□□□ -2.3
SMARCB1-209ENST00000635578 SMR3AQ99954 134 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms