RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 WBP1Q96G27 269 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 ALX4Q9H161 411 aaPredicted RBP11.48□□□□□ -0.57
LINC00540-203ENST00000631321 NARFLQ9H6Q4 476 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 PRMT8Q9NR22 394 aaPredicted RBP11.48□□□□□ -0.57
LINC00540-203ENST00000631321 DHCR7Q9UBM7 475 aaKnown RBP11.48□□□□□ -0.57
LINC00540-203ENST00000631321 DHDHQ9UQ10 334 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 A0A1W2PPC1 479 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 H3BSH0 61 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 I3L521 148 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 NUDT14O95848 222 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 PLGP00747 810 aaPredicted RBP11.48□□□□□ -0.57
LINC00540-203ENST00000631321 ATXN8OSP0DMR3 200 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 GTF2F2P13984 249 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 COL19A1Q14993 1142 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 DEFB133Q30KQ1 61 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 YOD1Q5VVQ6 348 aaPredicted RBP11.48□□□□□ -0.57
LINC00540-203ENST00000631321 GLT8D1Q68CQ7 371 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 KRT77Q7Z794 578 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 OR1L3Q8NH93 324 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 LRRC20Q8TCA0 184 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 ASB13Q8WXK3 278 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 WDR89Q96FK6 387 aaPredicted RBP11.48□□□□□ -0.57
LINC00540-203ENST00000631321 ABHD6Q9BV23 337 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 C1orf198Q9H425 327 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 APMAPQ9HDC9 416 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 COPS7AQ9UBW8 275 aa11.48□□□□□ -0.57
LINC00540-203ENST00000631321 RHPN2P1A8MT19 583 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 B8ZZF3 427 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 ZNF250P15622 560 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 FBLP22087 321 aaKnown RBP11.47□□□□□ -0.57
LINC00540-203ENST00000631321 CRABP1P29762 137 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 PTGS2P35354 604 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 H2BFSP57053 126 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 SEC61A1P61619 476 aaKnown RBP11.47□□□□□ -0.57
LINC00540-203ENST00000631321 ADAM8P78325 824 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 NSDHLQ15738 373 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 ETFDHQ16134 617 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 OTPQ5XKR4 325 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 NDUFAF7Q7L592 441 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 SLC29A4Q7RTT9 530 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 OR2AK2Q8NG84 335 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 OR51S1Q8NGJ8 323 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 OR52N5Q8NH56 324 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 PPP1R14AQ96A00 147 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 FOXN4Q96NZ1 517 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 KCNK15Q9H427 330 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 SCPEP1Q9HB40 452 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 MED9Q9NWA0 146 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 SEMA5BQ9P283 1151 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 CKLFQ9UBR5 152 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 KCNN3Q9UGI6 736 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 LRP12Q9Y561 859 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 THADAQ6YHU6 1953 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 COL5A1P20908 1838 aaPredicted RBP11.47□□□□□ -0.57
LINC00540-203ENST00000631321 FTCDNL1E5RQL4 147 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 OR2T1O43869 369 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 B3GALNT1O75752 331 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 HRGP04196 525 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 CD3DP04234 171 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 ITGB2P05107 769 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 FBXO45P0C2W1 286 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 GABRA1P14867 456 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 CALCRP30988 508 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 SLC26A5P58743 744 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 ACTBP60709 375 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 ACTG1P63261 375 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 EIF2B1Q14232 305 aaKnown RBP11.47□□□□□ -0.57
LINC00540-203ENST00000631321 MFSD13AQ14CX5 517 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 C2orf68Q2NKX9 166 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 B3GNTL1Q67FW5 361 aaPredicted RBP11.47□□□□□ -0.57
LINC00540-203ENST00000631321 STEAP1BQ6NZ63 245 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 CDH26Q8IXH8 852 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 MUC20Q8N307 709 aaPredicted RBP11.47□□□□□ -0.57
LINC00540-203ENST00000631321 D2HGDHQ8N465 521 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 TMEM229BQ8NBD8 167 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 OR5M1Q8NGP8 315 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 DNAJA3Q96EY1 480 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 ZNF587Q96SQ5 575 aaPredicted RBP11.47□□□□□ -0.57
LINC00540-203ENST00000631321 TPSD1Q9BZJ3 242 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 ZNF304Q9HCX3 659 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 R4GMQ9 66 aa11.47□□□□□ -0.57
LINC00540-203ENST00000631321 A0A0A6YYH2 397 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 A6NJ64 397 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 LDLRAD4O15165 306 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 DOK2O60496 412 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 AHSA1O95433 338 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 RLN1P04808 185 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 CD2P06729 351 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 LPLP06858 475 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 HNRNPKP61978 463 aaKnown RBP eCLIP11.46□□□□□ -0.57
LINC00540-203ENST00000631321 GLO1Q04760 184 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 ZP4Q12836 540 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 PCK2Q16822 640 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 VWA2Q5GFL6 755 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 ARHGAP40Q5TG30 622 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 PRAMEF17Q5VTA0 474 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 OR7E24Q6IFN5 339 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 GABRG1Q8N1C3 465 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 PLPP7Q8NBV4 271 aa11.46□□□□□ -0.57
LINC00540-203ENST00000631321 OR6M1Q8NGM8 313 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms