RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 SCPEP1Q9HB40 452 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 PLSCR3Q9NRY6 295 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 MRPL39Q9NYK5 338 aaKnown RBP11.12□□□□□ -0.63
CIITA-212ENST00000618207 EMC9Q9Y3B6 208 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 PRRC2CQ9Y520 2896 aaKnown RBP11.12□□□□□ -0.63
CIITA-212ENST00000618207 HMX3A6NHT5 357 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 A6NL46 340 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 AIPO00170 330 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 FAM157BP0CG42 384 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 PTGDSP41222 190 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 APOBEC1P41238 236 aaKnown RBP11.12□□□□□ -0.63
CIITA-212ENST00000618207 RIN1Q13671 783 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 SLC17A1Q14916 467 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 TMEM176BQ3YBM2 270 aaPredicted RBP11.12□□□□□ -0.63
CIITA-212ENST00000618207 SFRP4Q6FHJ7 346 aaPredicted RBP11.12□□□□□ -0.63
CIITA-212ENST00000618207 TMEM205Q6UW68 189 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 NDUFAF7Q7L592 441 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 GLB1L2Q8IW92 636 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 PLPP7Q8NBV4 271 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 SLC22A8Q8TCC7 542 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 GPR148Q8TDV2 347 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 SLC25A38Q96DW6 304 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 ZNF486Q96H40 463 aaPredicted RBP11.12□□□□□ -0.63
CIITA-212ENST00000618207 C4orf45Q96LM5 186 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 DCBLD2Q96PD2 775 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 MCUBQ9NWR8 336 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 KLK11Q9UBX7 282 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 OR5V1Q9UGF6 321 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 LRP12Q9Y561 859 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 B3GALT1Q9Y5Z6 326 aa11.12□□□□□ -0.63
CIITA-212ENST00000618207 CENPXA8MT69 81 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 ZNF814B7Z6K7 855 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 PDCD5O14737 125 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 UBL3O95164 117 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 UMODP07911 640 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 SYPP08247 313 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 PLPPR5Q32ZL2 321 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 SLC36A2Q495M3 483 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 LYPD8Q6UX82 237 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 ZNF679Q8IYX0 411 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 OR51D1Q8NGF3 324 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 POC1BQ8TC44 478 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 RHBDD1Q8TEB9 315 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 ZNF160Q9HCG1 818 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 CHST11Q9NPF2 352 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 PRMT8Q9NR22 394 aaPredicted RBP11.11□□□□□ -0.63
CIITA-212ENST00000618207 SLC39A1Q9NY26 324 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 KCNN3Q9UGI6 736 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 PCDHGA9Q9Y5G4 932 aaKnown RBP11.11□□□□□ -0.63
CIITA-212ENST00000618207 CACNA1HO95180 2353 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 NCOA6Q14686 2063 aaPredicted RBP11.11□□□□□ -0.63
CIITA-212ENST00000618207 LOC101059948A0A1B0GTJ6 334 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 CER1O95813 267 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 ARSBP15848 533 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 CDAP32320 146 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 CLDN20P56880 219 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 EGR3Q06889 387 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 PCOLCEQ15113 449 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 IGSF11Q5DX21 431 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 TMEM225Q6GV28 225 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 DUSP18Q8NEJ0 188 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 ASB10Q8WXI3 467 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 CMKLR1Q99788 373 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 CDCP1Q9H5V8 836 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 SDHAF3Q9NRP4 125 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 SERINC1Q9NRX5 453 aa11.11□□□□□ -0.63
CIITA-212ENST00000618207 A0A1W2PPL8 197 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 MEIS3P1A6NDR6 274 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 RGS13O14921 159 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 ORC5O43913 435 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 FGF5P12034 268 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 PTBP1P26599 531 aaKnown RBP eCLIP11.1□□□□□ -0.63
CIITA-212ENST00000618207 DPP4P27487 766 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 HOXA6P31267 233 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 GDNFP39905 211 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 CBX5P45973 191 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 RIDAP52758 137 aaKnown RBP11.1□□□□□ -0.63
CIITA-212ENST00000618207 UBE2NLQ5JXB2 153 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 WDSUB1Q8N9V3 476 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 OR52I2Q8NH67 350 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 MFSD8Q8NHS3 518 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 ZNF775Q96BV0 537 aaPredicted RBP11.1□□□□□ -0.63
CIITA-212ENST00000618207 ARRDC1-AS1Q9H2J1 176 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 PAQR5Q9NXK6 330 aaPredicted RBP11.1□□□□□ -0.63
CIITA-212ENST00000618207 VSX1Q9NZR4 365 aaPredicted RBP11.1□□□□□ -0.63
CIITA-212ENST00000618207 KLHL13Q9P2N7 655 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 IGHV3-15A0A0B4J1V0 119 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 LIPT2A6NK58 231 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 TMEM212A6NML5 194 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 C9J4A7 227 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 LMX1BO60663 402 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 CDK2P24941 298 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 CRABP1P29762 137 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 SLC6A1P30531 599 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 OTX2P32243 289 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 BTCP35070 178 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 MFAP5Q13361 173 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 DMRTC1Q5HYR2 192 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 TMEM156Q8N614 296 aa11.1□□□□□ -0.63
CIITA-212ENST00000618207 TMEM105Q8N8V8 129 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms