RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ZNF775Q96BV0 537 aaPredicted RBP13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 NKX6-2Q9C056 277 aaPredicted RBP13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 CHRDQ9H2X0 955 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC39A1Q9NY26 324 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 FREM3P0C091 2139 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 AK1P00568 194 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 FOXK1P85037 733 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 SORDQ00796 357 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 SLC35F2Q8IXU6 374 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 POMGNT2Q8NAT1 580 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 TAAR8Q969N4 342 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 LCORQ96JN0 433 aaPredicted RBP13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 ANKRD19PQ9H560 264 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 ZMIZ1Q9ULJ6 1067 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 LHX6Q9UPM6 363 aa13.09□□□□□ -0.31
SHROOM1-208ENST00000617339 MEIS3P1A6NDR6 274 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 FLRT2O43155 660 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF806P0C7X5 589 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 ZNF117Q03924 483 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 NR0B2Q15466 257 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 CBLN2Q8IUK8 224 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 BPIFCQ8NFQ6 507 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 KISS1RQ969F8 398 aaPredicted RBP13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 ALG12Q9BV10 488 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 EMC6Q9BV81 110 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 PCDHGA5Q9Y5G8 931 aa13.08□□□□□ -0.31
SHROOM1-208ENST00000617339 LOC400499M0QZD8 3231 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 GPR31O00270 319 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 XKRYO14609 159 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 GABRA1P14867 456 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 SFTPDP35247 375 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 STARP49675 285 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 LTBQ06643 244 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 ZCCHC12Q6PEW1 402 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 HAGHLQ6PII5 290 aaPredicted RBP13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 LINC00469Q8N7U9 141 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 ZNF248Q8NDW4 579 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 KCTD12Q96CX2 325 aaKnown RBP13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 CNN2Q99439 309 aaKnown RBP13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 TRAV20A0A0B4J274 112 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 WDPCPO95876 746 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 PPP3CBP16298 524 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 SPI1P17947 270 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 GPR143P51810 404 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 RPL18Q07020 188 aaKnown RBP13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 GFOD2Q3B7J2 385 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 LRRC37A5PQ49AS3 106 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 C9orf40Q8IXQ3 194 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 C1orf216Q8TAB5 229 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 LANCL2Q9NS86 450 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 KIF26BQ2KJY2 2108 aa13.08□□□□□ -0.32
SHROOM1-208ENST00000617339 A0A087WUJ7 227 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 DISC1C4P0D8 188 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 MPZL1O95297 269 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 IL11P20809 199 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 RAP2BP61225 183 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 SERTAD2Q14140 314 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 ARHGAP11AQ6P4F7 1023 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 MDGA2Q7Z553 956 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 TMEM185AQ8NFB2 350 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 TNFAIP8L1Q8WVP5 186 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 PELI1Q96FA3 418 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 MNTQ99583 582 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 TSNAXQ99598 290 aaKnown RBP13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 ESRP2Q9H6T0 727 aaKnown RBP13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 DENND4AQ7Z401 1863 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 PHF3Q92576 2039 aaKnown RBP13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 ICE1Q9Y2F5 2266 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 PRSS44E7EML9 344 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 ZNF354AO60765 605 aaPredicted RBP13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 IGHA1P01876 353 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 CBR1P16152 277 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 GLB1P16278 677 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 SCRN3Q0VDG4 424 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 DCAF12L2Q5VW00 463 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 FCRLAQ7L513 359 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 MFFQ9GZY8 342 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 C14orf105Q9NVL8 296 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 NPTNQ9Y639 398 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 TUBAL3A6NHL2 446 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 TRAPPC6AO75865 159 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 SPARCP09486 303 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 EPXP11678 715 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 RPS4Y1P22090 263 aaKnown RBP13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 MST1P26927 711 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 ABCD3P28288 659 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 PAPD4Q6PIY7 484 aaKnown RBP13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 PXT1Q8NFP0 134 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 NANPQ8TBE9 248 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 SMIM4Q8WVI0 70 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 NR4A3Q92570 626 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 SLC25A28Q96A46 364 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 TAS2R10Q9NYW0 307 aa13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 CDV3Q9UKY7 258 aaKnown RBP13.07□□□□□ -0.32
SHROOM1-208ENST00000617339 TRBV11-1A0A0K0K1C0 115 aa13.06□□□□□ -0.32
SHROOM1-208ENST00000617339 F8W036 122 aa13.06□□□□□ -0.32
SHROOM1-208ENST00000617339 F12P00748 615 aaPredicted RBP13.06□□□□□ -0.32
SHROOM1-208ENST00000617339 FUT7Q11130 342 aa13.06□□□□□ -0.32
SHROOM1-208ENST00000617339 NKAIN1Q4KMZ8 207 aa13.06□□□□□ -0.32
SHROOM1-208ENST00000617339 ZNF660Q6AZW8 331 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms