RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SLC36A2Q495M3 483 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 AGKQ53H12 422 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 RUNDC3AQ59EK9 446 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 ARMCX4Q5H9R4 360 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 TTC33Q6PID6 262 aaPredicted RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 DLEU7Q6UYE1 221 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 NANOGNBQ7Z5D8 188 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 IGFN1Q86VF2 1251 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 RETREG3Q86VR2 466 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 NKAIN4Q8IVV8 208 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 HIPK4Q8NE63 616 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 ABHD4Q8TB40 342 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 KLF14Q8TD94 323 aaPredicted RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 ST7LQ8TDW4 575 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 ASB10Q8WXI3 467 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 HDAC2Q92769 488 aaKnown RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 NABP1Q96AH0 204 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 THOC1Q96FV9 657 aaKnown RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 MARS2Q96GW9 593 aaKnown RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 TIMD4Q96H15 378 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 POM121L2Q96KW2 1035 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF607Q96SK3 696 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 PRSS27Q9BQR3 290 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 BCL2L14Q9BZR8 327 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 DENND2DQ9H6A0 471 aaPredicted RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 C20orf141Q9NUB4 165 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 NKIRAS2Q9NYR9 191 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 GPR160Q9UJ42 338 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 PURGQ9UJV8 347 aaKnown RBP7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 FBXL3Q9UKT7 428 aa7.29□□□□□ -1.24
SHKBP1-220ENST00000599716 PRORSD1PA6NEY8 169 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 PIP5K1CO60331 668 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 SERPINB7O75635 380 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 IGHV2-70P01814 119 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 HIST1H2ABP04908 130 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 SCG5P05408 212 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 THRBP10828 461 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 ACADSP16219 412 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 CD247P20963 164 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 LAP3P28838 519 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 GCH1P30793 250 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 IDH3AP50213 366 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF84P51523 738 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 CRYBA2P53672 197 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 STX1BP61266 288 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 MAGOHP61326 146 aaKnown RBP7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 PPP1CBP62140 327 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 HOXA4Q00056 320 aaPredicted RBP7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 CD47Q08722 323 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 FOXL1Q12952 345 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF154Q13106 437 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 LAPTM4AQ15012 233 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 OCLNQ16625 522 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 HIST3H3Q16695 136 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 CYP51A1Q16850 503 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF718Q3SXZ3 478 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 SWT1Q5T5J6 900 aaKnown RBP7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF774Q6NX45 483 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF613Q6PF04 617 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 RBMS3Q6XE24 437 aaKnown RBP7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 DOK3Q7L591 496 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 HIST3H2AQ7L7L0 130 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 MICU2Q8IYU8 434 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 OR1J2Q8NGS2 313 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 TMEM255BQ8WV15 326 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 HIST1H2ACQ93077 130 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 TAMM41Q96BW9 452 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 MRPL13Q9BYD1 178 aaKnown RBP7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 WNT5BQ9H1J7 359 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 TMEM38AQ9H6F2 299 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 CCNB1IP1Q9NPC3 277 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 ZNF229Q9UJW7 825 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 NUP50Q9UKX7 468 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 AUP1Q9Y679 476 aa7.28□□□□□ -1.24
SHKBP1-220ENST00000599716 PLSCR5A0PG75 271 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 TRAPPC13A5PLN9 417 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 H7C1C5 153 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 POLR3GO15318 223 aaPredicted RBP7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 TIMM8AO60220 97 aaPredicted RBP7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 FMO6PO60774 539 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 GPX2P18283 190 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 GDI2P50395 445 aaKnown RBP7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 ATP4BP51164 291 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 PRSS12P56730 875 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 LCN6P62502 163 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 TNFAIP6P98066 277 aaPredicted RBP7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 PSG7Q13046 419 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 ZMYND11Q15326 602 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 SLC9A3R2Q15599 337 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 TUSC1Q2TAM9 212 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 FAM209AQ5JX71 171 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 FAM201AQ5SY85 155 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 Q6ZR03 302 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 SPATC1Q76KD6 591 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 OR2Z1Q8NG97 314 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 ZNF420Q8TAQ5 688 aaPredicted RBP7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 NMD3Q96D46 503 aaKnown RBP7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 PKP2Q99959 881 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 ZNF426Q9BUY5 554 aa7.27□□□□□ -1.25
SHKBP1-220ENST00000599716 OR2H1Q9GZK4 316 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms