RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 GADD45GO95257 159 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 PTHP01270 115 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 CCL2P13500 99 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 FXYD6P3P58550 94 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 HSF2Q03933 536 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 PLP2Q04941 152 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 SGCAQ16586 387 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 MTX3Q5HYI7 312 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 PABPC1L2AQ5JQF8 200 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 CYP2R1Q6VVX0 501 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 THSD4Q6ZMP0 1018 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 FANK1Q8TC84 345 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 RASD2Q96D21 266 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 GPA33Q99795 319 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 RAB1BQ9H0U4 201 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 KCNN2Q9H2S1 579 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 MUC13Q9H3R2 512 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 MYOZ1Q9NP98 299 aaPredicted RBP13□□□□□ -0.33
TRIM28-205ENST00000595028 NRIP3Q9NQ35 241 aa13□□□□□ -0.33
TRIM28-205ENST00000595028 YLPM1P49750 1951 aaKnown RBP13□□□□□ -0.33
TRIM28-205ENST00000595028 PRSS37A4D1T9 235 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 M0R233 179 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 AHCYL1O43865 530 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 IGFBP1P08833 259 aaPredicted RBP12.99□□□□□ -0.33
TRIM28-205ENST00000595028 CST2P09228 141 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 FAM157BP0CG42 384 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 T-ENOLP0DO92 83 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 MSR1P21757 451 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 FPR3P25089 353 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 APEX1P27695 318 aaKnown RBP12.99□□□□□ -0.33
TRIM28-205ENST00000595028 LAP3P28838 519 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 SDHAP31040 664 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 RRM2P31350 389 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 EVX1P49640 407 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 PDLIM4P50479 330 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 GPR139Q6DWJ6 353 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 LCN8Q6JVE9 175 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 RINLQ6ZS11 566 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 ZER1Q7Z7L7 766 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 ADCK1Q86TW2 530 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 ZDHHC21Q8IVQ6 265 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 OR1J2Q8NGS2 313 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 SYT3Q9BQG1 590 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 POLE4Q9NR33 117 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 IL20RAQ9UHF4 553 aa12.99□□□□□ -0.33
TRIM28-205ENST00000595028 TCRBV5S2A0A599 114 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 NDUFS8O00217 210 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 SYNGR3O43761 229 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 OR10H3O60404 316 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 CRLF1O75462 422 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 TXNDC12O95881 172 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 ERCC1P07992 297 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-205ENST00000595028 CTLA4P16410 223 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 APLNRP35414 380 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 GUCA1AP43080 201 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-205ENST00000595028 MAGEA2P43356 314 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 LOXL1Q08397 574 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-205ENST00000595028 RGS7BPQ6MZT1 257 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-205ENST00000595028 SMARCD3Q6STE5 483 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 DPY19L2P2Q6ZN68 376 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 CPEB3Q8NE35 698 aaKnown RBP12.98□□□□□ -0.33
TRIM28-205ENST00000595028 NEU4Q8WWR8 484 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-205ENST00000595028 PIMREGQ9BSJ6 248 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 ZNF416Q9BWM5 594 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 OR2H1Q9GZK4 316 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 SYT4Q9H2B2 425 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 LRMDAQ9H2I8 198 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 OR51B6Q9H340 312 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 VSX1Q9NZR4 365 aaPredicted RBP12.98□□□□□ -0.33
TRIM28-205ENST00000595028 MYEF2Q9P2K5 600 aaKnown RBP12.98□□□□□ -0.33
TRIM28-205ENST00000595028 FZR1Q9UM11 496 aa12.98□□□□□ -0.33
TRIM28-205ENST00000595028 PRPF19Q9UMS4 504 aaKnown RBP12.98□□□□□ -0.33
TRIM28-205ENST00000595028 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.97□□□□□ -0.332e-23■■■□□ 17.1
TRIM28-205ENST00000595028 VWC2LB2RUY7 222 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 SOCS2O14508 198 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 PPP1R3DO95685 299 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 ADRA2AP08913 450 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 APEHP13798 732 aaKnown RBP12.97□□□□□ -0.33
TRIM28-205ENST00000595028 STOMP27105 288 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 IFNGR2P38484 337 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 ALDH3B1P43353 468 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 RPS6KA3P51812 740 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 PCBD1P61457 104 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 PSG4Q00888 419 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 ENDOGQ14249 297 aaKnown RBP12.97□□□□□ -0.33
TRIM28-205ENST00000595028 TRIM25Q14258 630 aaKnown RBP12.97□□□□□ -0.33
TRIM28-205ENST00000595028 TMEM249Q2WGJ8 235 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 LRP11Q86VZ4 500 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 DHFR2Q86XF0 187 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 ZCCHC24Q8N2G6 241 aaKnown RBP12.97□□□□□ -0.33
TRIM28-205ENST00000595028 AKR7LQ8NHP1 331 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 POM121L2Q96KW2 1035 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 BCL2L14Q9BZR8 327 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 WNT5BQ9H1J7 359 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 OR52D1Q9H346 318 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 TPK1Q9H3S4 243 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 MAGIXQ9H6Y5 334 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 EMC7Q9NPA0 242 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 TMCC3Q9ULS5 477 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 IER3IP1Q9Y5U9 82 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms