RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 STON2Q8WXE9 905 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 GTF3AQ92664 365 aaKnown RBP5.75□□□□□ -1.49
VPS53-213ENST00000572334 TSPAN32Q96QS1 320 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 MCHR1Q99705 422 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 PRSS27Q9BQR3 290 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 ULBP2Q9BZM5 246 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 DYNLRB1Q9NP97 96 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 MEPEQ9NQ76 525 aaPredicted RBP5.75□□□□□ -1.49
VPS53-213ENST00000572334 ZNF275Q9NSD4 429 aaPredicted RBP5.75□□□□□ -1.49
VPS53-213ENST00000572334 ARL8BQ9NVJ2 186 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 REV1Q9UBZ9 1251 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 SLC7A8Q9UHI5 535 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 ERGIC3Q9Y282 383 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 POFUT2Q9Y2G5 429 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 CEPT1Q9Y6K0 416 aa5.75□□□□□ -1.49
VPS53-213ENST00000572334 IGLV3-9A0A075B6K5 115 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ISPDA4D126 451 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 PRORSD1PA6NEY8 169 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 B4DSR2 109 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 C11orf98E9PRG8 122 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 RGS13O14921 159 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 TCF21O43680 179 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 CHP2O43745 196 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 SERPINI2O75830 405 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 SERPINA5P05154 406 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 MMP7P09237 267 aaPredicted RBP5.74□□□□□ -1.49
VPS53-213ENST00000572334 TSPAN19P0C672 248 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ADORA3P0DMS8 318 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 GAAP10253 952 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 NAT2P11245 290 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 CCL2P13500 99 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ZNF250P15622 560 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 HNF1AP20823 631 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ACHEP22303 614 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 PPIBP23284 216 aaKnown RBP5.74□□□□□ -1.49
VPS53-213ENST00000572334 SLC6A2P23975 617 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 S100A5P33763 92 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 MAGEB1P43366 347 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ALDH3B2P48448 385 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 CSNK1A1P48729 337 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ZNF133P52736 654 aaPredicted RBP5.74□□□□□ -1.49
VPS53-213ENST00000572334 TMBIM6P55061 237 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 AQP4P55087 323 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 BIDP55957 195 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 MTPNP58546 118 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 SF3A3Q12874 501 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS53-213ENST00000572334 HNRNPA0Q13151 305 aaKnown RBP5.74□□□□□ -1.49
VPS53-213ENST00000572334 MELKQ14680 651 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 AGKQ53H12 422 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ENTPD8Q5MY95 495 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ZNF613Q6PF04 617 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 SLC35D2Q76EJ3 337 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 PIWIL3Q7Z3Z3 882 aaKnown RBP5.74□□□□□ -1.49
VPS53-213ENST00000572334 HDDC2Q7Z4H3 204 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ARMC8Q8IUR7 673 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 CENPSQ8N2Z9 138 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 SLC22A24Q8N4F4 322 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 DPP10Q8N608 796 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 PCYOX1LQ8NBM8 494 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 OR6N1Q8NGY5 312 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ADAMTS16Q8TE57 1224 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 RDH5Q92781 318 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 TAMM41Q96BW9 452 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 CEP19Q96LK0 163 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 SEPHS2Q99611 448 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 EPYCQ99645 322 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 SPATA5L1Q9BVQ7 753 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 ASPNQ9BXN1 380 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 MRPL13Q9BYD1 178 aaKnown RBP5.74□□□□□ -1.49
VPS53-213ENST00000572334 TRIM15Q9C019 465 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 PCDHAC1Q9H158 963 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 NARFLQ9H6Q4 476 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 CACYBPQ9HB71 228 aaKnown RBP5.74□□□□□ -1.49
VPS53-213ENST00000572334 TMEM27Q9HBJ8 222 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 G6PC2Q9NQR9 355 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 TMEM38BQ9NVV0 291 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 FKBP14Q9NWM8 211 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 GLTPQ9NZD2 209 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 SPEF1Q9Y4P9 236 aa5.74□□□□□ -1.49
VPS53-213ENST00000572334 IGKV1D-43A0A0B4J1Z2 117 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 CPSF4LA6NMK7 179 aaKnown RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 ZNF726A6NNF4 738 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 C17orf100A8MU93 164 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 VSTM5A8MXK1 200 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 DHHO43323 396 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 UBL3O95164 117 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 CH25HO95992 272 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 BCL10O95999 233 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 MT-ATP6P00846 226 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 KRT8P05787 483 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 MSMBP08118 114 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 FAM157BP0CG42 384 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 SMIM18P0DKX4 95 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 SAGP10523 405 aaPredicted RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 ATP6V1B1P15313 513 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 FUT4P22083 530 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 AHCYP23526 432 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 GPR6P46095 362 aaPredicted RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 TMEM33P57088 247 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 MRPS11P82912 194 aaKnown RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms