RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 SHARPINQ9H0F6 387 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 KRCC1Q9NPI7 259 aaPredicted RBP14.46□□□□□ -0.09
CLK3-210ENST00000563112 DCAF13Q9NV06 445 aaKnown RBP14.46□□□□□ -0.09
CLK3-210ENST00000563112 SLCO1C1Q9NYB5 712 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 TAAR3PQ9P1P4 343 aa14.46□□□□□ -0.09
CLK3-210ENST00000563112 MALRD1Q5VYJ5 2156 aa14.46□□□□□ -0.1
CLK3-210ENST00000563112 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.46□□□□□ -0.12e-28■■■□□ 18.5
CLK3-210ENST00000563112 A0A1W2PPL8 197 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 A0A1W2PRQ8 180 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 CD14P08571 375 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 CST2P09228 141 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 FAM157CP0CG43 387 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 ZNF250P15622 560 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 ITGA2P17301 1181 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 GDI2P50395 445 aaKnown RBP14.45□□□□□ -0.1
CLK3-210ENST00000563112 FHL1Q13642 323 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 DGCR6Q14129 220 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 FGD3Q5JSP0 725 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 TMEM154Q6P9G4 183 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 UGT2A3Q6UWM9 527 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 RNF148Q8N7C7 305 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 FAM156AQ8NDB6 213 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 CPEB3Q8NE35 698 aaKnown RBP14.45□□□□□ -0.1
CLK3-210ENST00000563112 SLC7A13Q8TCU3 470 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 RDH5Q92781 318 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 MSI2Q96DH6 328 aaKnown RBP14.45□□□□□ -0.1
CLK3-210ENST00000563112 MYEF2Q9P2K5 600 aaKnown RBP14.45□□□□□ -0.1
CLK3-210ENST00000563112 AURKCQ9UQB9 309 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 TIMM10BQ9Y5J6 103 aa14.45□□□□□ -0.1
CLK3-210ENST00000563112 C12orf71A8MTZ7 269 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 LYNX1G3V0Z9 82 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 CDC42EP2O14613 210 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 AHCYL1O43865 530 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 NDUFB2O95178 105 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 TGFAP01135 160 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 MT-ND5P03915 603 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 TACSTD2P09758 323 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 LYNX1P0DP58 116 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 NAT2P11245 290 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 MSR1P21757 451 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 LAP3P28838 519 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 GNGT1P63211 74 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 PSG4Q00888 419 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 RIN1Q13671 783 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 ALKBH6Q3KRA9 238 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 C1orf174Q8IYL3 243 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 CLDN22Q8N7P3 220 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 OR1J1Q8NGS3 322 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 AKR7LQ8NHP1 331 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 HPS1Q92902 700 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 FAM46AQ96IP4 442 aaKnown RBP14.44□□□□□ -0.1
CLK3-210ENST00000563112 WACQ9BTA9 647 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 OR2H1Q9GZK4 316 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 GORASP2Q9H8Y8 452 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 CHODLQ9H9P2 273 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 HINT3Q9NQE9 182 aaKnown RBP14.44□□□□□ -0.1
CLK3-210ENST00000563112 NDUFAF4Q9P032 175 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 MAGEL2Q9UJ55 1249 aa14.44□□□□□ -0.1
CLK3-210ENST00000563112 IGLV3-9A0A075B6K5 115 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 C5orf49A4QMS7 147 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 LRP5LA4QPB2 252 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 LILRA1O75019 489 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 CLPTM1O96005 669 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 HPXP02790 462 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 HNF1AP20823 631 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 ACHEP22303 614 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 GCH1P30793 250 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 GPR6P46095 362 aaPredicted RBP14.43□□□□□ -0.1
CLK3-210ENST00000563112 SMIM11AP58511 58 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 MRPS11P82912 194 aaKnown RBP14.43□□□□□ -0.1
CLK3-210ENST00000563112 PCGF3Q3KNV8 242 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 ZNF718Q3SXZ3 478 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 SAMD4BQ5PRF9 694 aaKnown RBP14.43□□□□□ -0.1
CLK3-210ENST00000563112 ELFN2Q5R3F8 820 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 FOXL2NBQ6ZUU3 175 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 TSEN54Q7Z6J9 526 aaKnown RBP14.43□□□□□ -0.1
CLK3-210ENST00000563112 SYT9Q86SS6 491 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 MCUR1Q96AQ8 359 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 POM121L2Q96KW2 1035 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 C7orf34Q96L11 122 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 Q96M85 177 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 ZNF570Q96NI8 536 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 LRRC37BQ96QE4 947 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 SNX18Q96RF0 628 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 MDFIQ99750 246 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 NDE1Q9NXR1 346 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 TAGLN3Q9UI15 199 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 ARL2BPQ9Y2Y0 163 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 ADAM18Q9Y3Q7 739 aa14.43□□□□□ -0.1
CLK3-210ENST00000563112 C17orf100A8MU93 164 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 H7C1C5 153 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 PTP4A3O75365 173 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 DCTN3O75935 186 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 HSD17B1P14061 328 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 COL8A2P25067 703 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 TMEM33P57088 247 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 ERVS71-1P61550 626 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 LCN6P62502 163 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 MXRA7P84157 204 aa14.42□□□□□ -0.1
CLK3-210ENST00000563112 GPR139Q6DWJ6 353 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms