RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SGMS2Q8NHU3 365 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 ZNF519Q8TB69 540 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 ZNF418Q8TF45 676 aaPredicted RBP16.18■□□□□ 0.18
VPS35-202ENST00000561713 IPCEF1Q8WWN9 437 aaPredicted RBP16.18■□□□□ 0.18
VPS35-202ENST00000561713 BPIFA2Q96DR5 249 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 ZMYND19Q96E35 227 aaPredicted RBP16.18■□□□□ 0.18
VPS35-202ENST00000561713 LRRC37BQ96QE4 947 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 TXNIPQ9H3M7 391 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 ZNF446Q9NWS9 450 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 GID8Q9NWU2 228 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 GRIP1Q9Y3R0 1128 aa16.18■□□□□ 0.18
VPS35-202ENST00000561713 LOC100509620A0A075B734 347 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 A0A1W2PPL8 197 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 SLC22A23A1A5C7 686 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 ELOVL7A1L3X0 281 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 TMEM89A2RUT3 159 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 C5orf49A4QMS7 147 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 CENPBD1B2RD01 187 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 TPD52L2O43399 206 aaKnown RBP16.17■□□□□ 0.18
VPS35-202ENST00000561713 ZNF682O95780 498 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 IGF2P01344 180 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 GAAP10253 952 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 THRBP10828 461 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 STOMP27105 288 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 GPR4P46093 362 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 CTXN1P60606 82 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 ST3GAL3Q11203 375 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 NRN1LQ496H8 165 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 FAHD2BQ6P2I3 314 aaPredicted RBP16.17■□□□□ 0.18
VPS35-202ENST00000561713 SLC25A47Q6Q0C1 308 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 USP51Q70EK9 711 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 PEG10Q86TG7 708 aaKnown RBP16.17■□□□□ 0.18
VPS35-202ENST00000561713 OFCC1Q8IZS5 231 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 OR1J2Q8NGS2 313 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 OR51A7Q8NH64 312 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 FAM216AQ8WUB2 273 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 LIPHQ8WWY8 451 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 C11orf40Q8WZ69 217 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 FAHD2AQ96GK7 314 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 SIAEQ9HAT2 523 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 PCDHB10Q9UN67 800 aa16.17■□□□□ 0.18
VPS35-202ENST00000561713 NME4O00746 187 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 FFAR1O14842 300 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 NPPAP01160 153 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 DRD4P21917 467 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 LAP3P28838 519 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 RBMXP38159 391 aaKnown RBP16.16■□□□□ 0.18
VPS35-202ENST00000561713 SLC7A2P52569 658 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 SELENOVP59797 346 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 HILS1P60008 231 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 RPL27P61353 136 aaKnown RBP16.16■□□□□ 0.18
VPS35-202ENST00000561713 PSG4Q00888 419 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 LIPEQ05469 1076 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 SCGB2A2Q13296 93 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 FHL1Q13642 323 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 OTPQ5XKR4 325 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 C1orf229Q6ZS94 237 aaPredicted RBP16.16■□□□□ 0.18
VPS35-202ENST00000561713 LRRC75AQ8NAA5 344 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 POM121L2Q96KW2 1035 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 ZNF416Q9BWM5 594 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 BCL2L14Q9BZR8 327 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 WNT5BQ9H1J7 359 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 LRMDAQ9H2I8 198 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 KCNN2Q9H2S1 579 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 SMURF2Q9HAU4 748 aa16.16■□□□□ 0.18
VPS35-202ENST00000561713 STX18Q9P2W9 335 aaKnown RBP16.16■□□□□ 0.18
VPS35-202ENST00000561713 ZSCAN5BA6NJL1 495 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 NPIPB13A6NJU9 1138 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 NPIPB4C9JG80 1138 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 SPRY3O43610 288 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 PTHP01270 115 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 IGHMP01871 453 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 TFP02787 698 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 IFNW1P05000 195 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 RAD52P43351 418 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 LMO4P61968 165 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 SELENOWP63302 87 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 THEM4Q5T1C6 240 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 ZNF774Q6NX45 483 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 TBPL2Q6SJ96 375 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 SLC15A3Q8IY34 581 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 OR51F2Q8NH61 342 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 ABHD4Q8TB40 342 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 SLC25A40Q8TBP6 338 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 HSH2DQ96JZ2 352 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 ALG12Q9BV10 488 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 FNDC11Q9BVV2 318 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 OR2H1Q9GZK4 316 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 EMC7Q9NPA0 242 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 SLCO1C1Q9NYB5 712 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 ADAM18Q9Y3Q7 739 aa16.15■□□□□ 0.18
VPS35-202ENST00000561713 LOC105371242A0A075B767 164 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 IGHV1-69-2A0A0G2JMI3 117 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 EFCAB9A8MZ26 197 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 TRIM77I1YAP6 450 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 CXCR6O00574 342 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 AVPP01185 164 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 NCK1P16333 377 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 EPHA1P21709 976 aa16.14■□□□□ 0.17
VPS35-202ENST00000561713 GDI2P50395 445 aaKnown RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms