RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 MRPL19P49406 292 aaKnown RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 UCNP55089 124 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 WNT4P56705 351 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SLC22A6Q4U2R8 563 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 HSD17B12Q53GQ0 312 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 FAM27D1Q5T7N8 215 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 PEAR1Q5VY43 1037 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SLX4IPQ5VYV7 408 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 C8orf82Q6P1X6 216 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SPARTQ8N0X7 666 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 LILRB2Q8N423 598 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 MARVELD2Q8N4S9 558 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SLC15A4Q8N697 577 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 RHOXF1Q8NHV9 184 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 NANOS1Q8WY41 292 aaKnown RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 C11orf40Q8WZ69 217 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 KISS1RQ969F8 398 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SPTSSAQ969W0 71 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 C12orf43Q96C57 262 aaKnown RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SLC25A44Q96H78 314 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 TSPAN32Q96QS1 320 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 MYCBPQ99417 103 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ARPC5LQ9BPX5 153 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 FUNDC2Q9BWH2 189 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 TXNIPQ9H3M7 391 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ASCL3Q9NQ33 180 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 MRPL15Q9P015 296 aaKnown RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 OR14J1Q9UGF5 321 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 POLQO75417 2590 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF292O60281 2723 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 JMJD1CQ15652 2540 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 IGLV3-12A0A075B6K2 115 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 MEIS3P1A6NDR6 274 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 VSTM5A8MXK1 200 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF814B7Z6K7 855 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 H3BMH7 237 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SEMA7AO75326 666 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 EPPINO95925 133 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 PRB1P04280 392 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SBK2P0C263 348 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 RBM34P42696 430 aaKnown RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 TPTEP56180 551 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 RAB1AP62820 205 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 IGLV3-21P80748 117 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 PRKCDQ05655 676 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 IL18R1Q13478 541 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 BLMHQ13867 455 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 INSL4Q14641 139 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 KCTD21Q4G0X4 260 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 CEP78Q5JTW2 689 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 TSPO2Q5TGU0 170 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 LINGO2Q7L985 606 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 FAM26EQ8N5C1 309 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 DNAAF1Q8NEP3 725 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 OR4C15Q8NGM1 316 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 FOXB1Q99853 325 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 BEX2Q9BXY8 128 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 OPN3Q9H1Y3 402 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SLC26A1Q9H2B4 701 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ISG20L2Q9H9L3 353 aaKnown RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ZMAT3Q9HA38 289 aaKnown RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 BEX1Q9HBH7 125 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 CMC2Q9NRP2 79 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 MAN2C1Q9NTJ4 1040 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF226Q9NYT6 803 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 GLTPQ9NZD2 209 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 PCDHGB1Q9Y5G3 927 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 FKBP7Q9Y680 259 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SETD2Q9BYW2 2564 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ATG2AQ2TAZ0 1938 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 LIPT2A6NK58 231 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 TM4SF5O14894 197 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 TIMM8AO60220 97 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 UPK3AO75631 287 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF205O95201 554 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ETV1P50549 477 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SUCLG1P53597 346 aaKnown RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ISL1P61371 349 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ACTC1P68032 377 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ACTA1P68133 377 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 KEAP1Q14145 624 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 P2RY14Q15391 338 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SF3B4Q15427 424 aaKnown RBP eCLIP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 LTC4SQ16873 150 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 RSBN1Q5VWQ0 802 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF385CQ66K41 422 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF774Q6NX45 483 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 UGT2A3Q6UWM9 527 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 USP51Q70EK9 711 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SLC46A3Q7Z3Q1 461 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SAMD12Q8N8I0 201 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 IL17RDQ8NFM7 739 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 OR52I1Q8NGK6 324 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 MFSD8Q8NHS3 518 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 GHSRQ92847 366 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM106AQ96A25 262 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 OR14A2Q96R54 314 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 CHRNA10Q9GZZ6 450 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 B9D1Q9UPM9 204 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 ATP23Q9Y6H3 246 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms