RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	SCARB2	Q14108	478 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	SLC9A3R2	Q15599	337 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	HIST3H3	Q16695	136 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	SPATA46	Q5T0L3	261 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	MBNL2	Q5VZF2	373 aa	Known RBP	10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	LEG1	Q6P5S2	330 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	TTC33	Q6PID6	262 aa	Predicted RBP	10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	ARMC8	Q8IUR7	673 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	KLHL36	Q8N4N3	616 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	SLC25A40	Q8TBP6	338 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	KLF14	Q8TD94	323 aa	Predicted RBP	10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	C10orf82	Q8WW14	230 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	IPCEF1	Q8WWN9	437 aa	Predicted RBP	10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	DCLRE1C	Q96SD1	692 aa	Known RBP	10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	ZNF347	Q96SE7	839 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	SLC19A3	Q9BZV2	496 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	TMEM38A	Q9H6F2	299 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	SIAE	Q9HAT2	523 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	CCNB1IP1	Q9NPC3	277 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	SLC25A37	Q9NYZ2	338 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	KLHL21	Q9UJP4	597 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	ZNF229	Q9UJW7	825 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	INSIG2	Q9Y5U4	225 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	WNK2	Q9Y3S1	2297 aa		10.69	□□□□□ -0.7
SHMT2-223	ENST00000556689	C5orf49	A4QMS7	147 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	ZSCAN5B	A6NJL1	495 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	IGHV2-70	P01814	119 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	CD55	P08174	381 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	MDK	P21741	143 aa	Predicted RBP	10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	AQP1	P29972	269 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	WNT5A	P41221	380 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	MTNR1A	P48039	350 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	GDI2	P50395	445 aa	Known RBP	10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	SF3A3	Q12874	501 aa	Known RBP eCLIP	10.68	□□□□□ -0.7	1e-13	■■■□□ 16.4
SHMT2-223	ENST00000556689	MAPRE2	Q15555	327 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	TMEM255A	Q5JRV8	349 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	LRIF1	Q5T3J3	769 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	CGB2	Q6NT52	195 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	C16orf87	Q6PH81	154 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	LRRC28	Q86X40	367 aa	Predicted RBP	10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	ZNF101	Q8IZC7	436 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	C10orf111	Q8N326	155 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	SPIC	Q8N5J4	248 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	SMYD1	Q8NB12	490 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	GEMIN6	Q8WXD5	167 aa	Known RBP	10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	TMIGD2	Q96BF3	282 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	POM121L2	Q96KW2	1035 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	OR52B2	Q96RD2	323 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	MRPL13	Q9BYD1	178 aa	Known RBP	10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	OR2J1	Q9GZK6	312 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	PATZ1	Q9HBE1	687 aa	Known RBP	10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	SLAMF8	Q9P0V8	285 aa		10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	CGGBP1	Q9UFW8	167 aa	Predicted RBP	10.68	□□□□□ -0.7
SHMT2-223	ENST00000556689	ARHGAP32	A7KAX9	2087 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	LOC100509620	A0A075B734	347 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689		A0A1W2PRG6	482 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	CENPBD1	B2RD01	187 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	BLOC1S5-TXNDC5	H3BN57	136 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689		M0R3H8	397 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	ASAH2B	P0C7U1	165 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	UMPS	P11172	480 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	ACADS	P16219	412 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	PCGF2	P35227	344 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	TNFAIP6	P98066	277 aa	Predicted RBP	10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	TMEM155	Q4W5P6	130 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	SPRN	Q5BIV9	151 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	ZMAT1	Q5H9K5	638 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	ENTPD8	Q5MY95	495 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	PIGW	Q7Z7B1	504 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	MSRB3	Q8IXL7	192 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	OR52E2	Q8NGJ4	325 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	TAF15	Q92804	592 aa	Known RBP eCLIP	10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	ARHGDIG	Q99819	225 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	EBF4	Q9BQW3	602 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	MSL2	Q9HCI7	577 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	TMEM106B	Q9NUM4	274 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	VAPA	Q9P0L0	249 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	GMEB1	Q9Y692	573 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	CAPN7	Q9Y6W3	813 aa		10.67	□□□□□ -0.7
SHMT2-223	ENST00000556689	CPSF4L	A6NMK7	179 aa	Known RBP	10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	EVPLL	A8MZ36	301 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	MCIDAS	D6RGH6	385 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689		H3BSA7	217 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	KPNA4	O00629	521 aa	Predicted RBP	10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	SLC22A2	O15244	555 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	TRMU	O75648	421 aa	Known RBP	10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	LYPD3	O95274	346 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	GPANK1	O95872	356 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	THY1	P04216	161 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	ZNF32	P17041	273 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	GPX2	P18283	190 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	CDA	P32320	146 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	ARHGDIA	P52565	204 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	ZNF133	P52736	654 aa	Predicted RBP	10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	PPP1CB	P62140	327 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	MRPS34	P82930	218 aa	Known RBP	10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	PSG4	Q00888	419 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	PAX8	Q06710	450 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	CDK5R2	Q13319	367 aa		10.66	□□□□□ -0.7
SHMT2-223	ENST00000556689	SGCA	Q16586	387 aa		10.66	□□□□□ -0.7

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