RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ANKRD10Q9NXR5 420 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 TBC1D24Q9ULP9 559 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 ACOD1A6NK06 481 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 GJE1A6NN92 205 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 ZNF254O75437 659 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 ELK1P19419 428 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 SCN1BQ07699 218 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 OTPQ5XKR4 325 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 GPAT4Q86UL3 456 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 ZNF227Q86WZ6 799 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 ZNF676Q8N7Q3 588 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 NAA11Q9BSU3 229 aaPredicted RBP23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 MRPS18CQ9Y3D5 142 aaKnown RBP23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 DCHS1Q96JQ0 3298 aa23.49■■□□□ 1.35
CCDC88C-205ENST00000553403 RAF1P04049 648 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 CSF3P09919 207 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 NPR2P20594 1047 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 KIR3DL2P43630 455 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 GPR85P60893 370 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 CSNK2A1P68400 391 aaPredicted RBP23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 TRMT10AQ8TBZ6 339 aaKnown RBP23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 GPR148Q8TDV2 347 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 B3GAT2Q9NPZ5 323 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 TEKT2Q9UIF3 430 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 A0A0G2JMM0 328 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 A0A1B0GTH9 108 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 A0A1W2PPB8 328 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 A0A1W2PRS3 328 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 KIR3DP1A8MWS1 328 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 GPR171O14626 319 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 SLC2A2P11168 524 aaPredicted RBP23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 B3GALT5-AS1P59052 145 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 WDR38Q5JTN6 314 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 DEGS2Q6QHC5 323 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 GDPD3Q7L5L3 318 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 KCNE4Q8WWG9 221 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 STMN3Q9NZ72 180 aa23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 AK6Q9Y3D8 172 aaKnown RBP23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 MRPS18BQ9Y676 258 aaKnown RBP23.48■■□□□ 1.35
CCDC88C-205ENST00000553403 TRBV5-7A0A0A0MS05 114 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 A0A1W2PQ09 198 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 RAMP1O60894 148 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 VAMP5O95183 116 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 ATF1P18846 271 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 CNR1P21554 472 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 LAP3P28838 519 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 CD97P48960 835 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 CAMK2DQ13557 499 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 IL18Q14116 193 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 STPG1Q5TH74 334 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 SLC25A47Q6Q0C1 308 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 ZNF554Q86TJ5 538 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 OR10H5Q8NGA6 315 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 HTRA1Q92743 480 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 SLITRK2Q9H156 845 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 ETAA1Q9NY74 926 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 EXTL2Q9UBQ6 330 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 LRP12Q9Y561 859 aa23.47■■□□□ 1.35
CCDC88C-205ENST00000553403 A0A087WV48 116 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 TRABD2BA6NFA1 517 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 LRRC3CA6NJW4 275 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 ZNF726A6NNF4 738 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 DNPH1O43598 174 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 TLX3O43711 291 aaPredicted RBP23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 TALDO1P37837 337 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 OC90Q02509 493 aaPredicted RBP23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 POU4F3Q15319 338 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 SYT9Q86SS6 491 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 SAMD12Q8N8I0 201 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 ST7LQ8TDW4 575 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 C11orf40Q8WZ69 217 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 RHBDL2Q9NX52 303 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 ABI3Q9P2A4 366 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 ALPK2Q86TB3 2170 aa23.46■■□□□ 1.35
CCDC88C-205ENST00000553403 ASAH1Q13510 395 aa23.45■■□□□ 1.34
CCDC88C-205ENST00000553403 HIST3H3Q16695 136 aa23.45■■□□□ 1.34
CCDC88C-205ENST00000553403 DCXRQ7Z4W1 244 aa23.45■■□□□ 1.34
CCDC88C-205ENST00000553403 CMTM3Q96MX0 182 aa23.45■■□□□ 1.34
CCDC88C-205ENST00000553403 TCF7L1Q9HCS4 588 aa23.45■■□□□ 1.34
CCDC88C-205ENST00000553403 MALT1Q9UDY8 824 aa23.45■■□□□ 1.34
CCDC88C-205ENST00000553403 HLA-DQB1P01920 261 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 EIF4EP06730 217 aaKnown RBP23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 NR2C1P13056 603 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 SPNP16150 400 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 RBMS1P29558 406 aaKnown RBP23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 AGFG1P52594 562 aaKnown RBP23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 P2RY14Q15391 338 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 DCAF10Q5QP82 559 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 ABHD17BQ5VST6 288 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 CATSPERDQ86XM0 798 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 SNRNP27Q8WVK2 155 aaKnown RBP23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 R4GMQ9 66 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 A0A0J9YW62 118 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 SRSF10O75494 262 aaKnown RBP23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 PAHP00439 452 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 KLK2P20151 261 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 CD82P27701 267 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 CASRP41180 1078 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 MAGEB1P43366 347 aa23.44■■□□□ 1.34
CCDC88C-205ENST00000553403 AIMP2Q13155 320 aaKnown RBP23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms