RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 POLE4Q9NR33 117 aa12.25□□□□□ -0.45
PTCH1-226ENST00000553011 COA3Q9Y2R0 106 aaPredicted RBP12.25□□□□□ -0.45
PTCH1-226ENST00000553011 OR6C68A6NDL8 312 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 H3BN98 237 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 MGRN1O60291 552 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 MPZL1O95297 269 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 GPANK1O95872 356 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 RENP00797 406 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 CRYAAP02489 173 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 SOD3P08294 240 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 ZNF32P17041 273 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 MSR1P21757 451 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 POU1F1P28069 291 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 GUCA1AP43080 201 aaPredicted RBP12.24□□□□□ -0.45
PTCH1-226ENST00000553011 ENDOGQ14249 297 aaKnown RBP12.24□□□□□ -0.45
PTCH1-226ENST00000553011 PGGHGQ32M88 737 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 ZNF362Q5T0B9 420 aaPredicted RBP12.24□□□□□ -0.45
PTCH1-226ENST00000553011 UGT2A3Q6UWM9 527 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 DPPA2Q7Z7J5 298 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 ZNF584Q8IVC4 421 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 OR6V1Q8N148 313 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 NPEPL1Q8NDH3 523 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 OR2T33Q8NG76 320 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 TEX47Q8TBZ9 253 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 SMAP2Q8WU79 429 aaPredicted RBP12.24□□□□□ -0.45
PTCH1-226ENST00000553011 IGFBPL1Q8WX77 278 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 RAB3IPQ96QF0 476 aaPredicted RBP12.24□□□□□ -0.45
PTCH1-226ENST00000553011 SNX18Q96RF0 628 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 BDH2Q9BUT1 245 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 ZNF416Q9BWM5 594 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 SEMA6AQ9H2E6 1030 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 SRA1Q9HD15 236 aaKnown RBP12.24□□□□□ -0.45
PTCH1-226ENST00000553011 RPRD1BQ9NQG5 326 aaKnown RBP12.24□□□□□ -0.45
PTCH1-226ENST00000553011 EDARQ9UNE0 448 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 B9D1Q9UPM9 204 aa12.24□□□□□ -0.45
PTCH1-226ENST00000553011 F8P00451 2351 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 IGLV1-36A0A0B4J1U3 117 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 H3BNX3 289 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 SERPINA5P05154 406 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 CST2P09228 141 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 DANCRP0C864 163 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 OSMP13725 252 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 ZNF23P17027 643 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 CRABP1P29762 137 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 CENPAP49450 140 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 DAPP51397 102 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 HGFACQ04756 655 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 GABPB1Q06547 395 aaPredicted RBP12.23□□□□□ -0.45
PTCH1-226ENST00000553011 PABPC1L2AQ5JQF8 200 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 FAHD1Q6P587 224 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 HIPK1Q86Z02 1210 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 GLB1L2Q8IW92 636 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 DDOQ99489 341 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 DHRS9Q9BPW9 319 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 KCNN2Q9H2S1 579 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 CCNB1IP1Q9NPC3 277 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 KIF17Q9P2E2 1029 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 BAIAP2Q9UQB8 552 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 LAMP3Q9UQV4 416 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 ACANP16112 2415 aa12.23□□□□□ -0.45
PTCH1-226ENST00000553011 FLNAP21333 2647 aaKnown RBP12.23□□□□□ -0.45
PTCH1-226ENST00000553011 CHD3Q12873 2000 aaKnown RBP12.22□□□□□ -0.45
PTCH1-226ENST00000553011 SAC3D1A6NKF1 404 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 FAM171A2A8MVW0 826 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 G3V2T6 193 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 MITFO75030 526 aaPredicted RBP12.22□□□□□ -0.45
PTCH1-226ENST00000553011 GAAP10253 952 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 CCL2P13500 99 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 ZNF35P13682 527 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 APEX1P27695 318 aaKnown RBP12.22□□□□□ -0.45
PTCH1-226ENST00000553011 PYCR1P32322 319 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 FABP6P51161 128 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 ART1P52961 327 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 PSG4Q00888 419 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 HSF2Q03933 536 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 CRMP1Q14194 572 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 GINS1Q14691 196 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 MEP1BQ16820 701 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 DEFB113Q30KQ7 82 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 ACSM5Q6NUN0 579 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 DNM1P34Q6PK57 102 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.22□□□□□ -0.45
PTCH1-226ENST00000553011 PAQR4Q8N4S7 273 aaPredicted RBP12.22□□□□□ -0.45
PTCH1-226ENST00000553011 SLC37A3Q8NCC5 494 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 IL17RDQ8NFM7 739 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 AKR7LQ8NHP1 331 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 C11orf40Q8WZ69 217 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 PIGTQ969N2 578 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 MBD6Q96DN6 1003 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 CENPNQ96H22 339 aaPredicted RBP12.22□□□□□ -0.45
PTCH1-226ENST00000553011 PKP2Q99959 881 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 RACGAP1Q9H0H5 632 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 WNT5BQ9H1J7 359 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 PAPOLBQ9NRJ5 636 aaKnown RBP12.22□□□□□ -0.45
PTCH1-226ENST00000553011 FBXL3Q9UKT7 428 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 FKBP7Q9Y680 259 aa12.22□□□□□ -0.45
PTCH1-226ENST00000553011 MED13LQ71F56 2210 aa12.21□□□□□ -0.45
PTCH1-226ENST00000553011 TEP1Q99973 2627 aaKnown RBP12.21□□□□□ -0.45
PTCH1-226ENST00000553011 C12orf71A8MTZ7 269 aa12.21□□□□□ -0.45
PTCH1-226ENST00000553011 CD8AP01732 235 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms