RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ADAM19Q9H013 955 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 ARL6Q9H0F7 186 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM138Q9NPI0 162 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 SDHAF2Q9NX18 166 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 TAS2R4Q9NYW5 299 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF230Q9UIE0 474 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 NUP50Q9UKX7 468 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 LOC101059948A0A1B0GTJ6 334 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 TEX51A0A1B0GUA7 166 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 hCG_1807616A0A1W2PRN6 198 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 DCDC2BA2VCK2 349 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 XKRYO14609 159 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 SDC3O75056 442 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 ALOX12BO75342 701 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 DDAH2O95865 285 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 IGF2P01344 180 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 LPLP06858 475 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 LIPCP11150 499 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 S100A11P31949 105 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 SKP1P63208 163 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 SORDQ00796 357 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 CCINQ13939 588 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 MOGAT2Q3SYC2 334 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 C17orf107Q6ZR85 190 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 ADGRG3Q86Y34 549 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 C9orf40Q8IXQ3 194 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 GALNT16Q8N428 558 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 CLEC1AQ8NC01 280 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 LMX1AQ8TE12 382 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF721Q8TF20 911 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 DUSP19Q8WTR2 217 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 SLC38A3Q99624 504 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 MRI1Q9BV20 369 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 TINAGL1Q9GZM7 467 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 EXOSC3Q9NQT5 275 aaKnown RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 GPR27Q9NS67 375 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 FBXO4Q9UKT5 387 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 CDV3Q9UKY7 258 aaKnown RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 PLCL2Q9UPR0 1127 aa6.75□□□□□ -1.33
LIMA1-213ENST00000552720 MRPS18BQ9Y676 258 aaKnown RBP6.75□□□□□ -1.33
LIMA1-213ENST00000552720 UBE2QL1A1L167 161 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 PRSS37A4D1T9 235 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 F5H5P2 479 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 H0YIG0 161 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SIGLEC5O15389 551 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 CDC40O60508 579 aaKnown RBP eCLIP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 IGKV3-11P04433 115 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 CSF1P09603 554 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 AKAIN1P0CW23 69 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 CSF2RBP32927 897 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 PRSS3P35030 304 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 RORAP35398 523 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 DLX5P56178 289 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 ADAM8P78325 824 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SIGLEC14Q08ET2 396 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 RASGEF1BQ0VAM2 473 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 BIKQ13323 160 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 RAB11BQ15907 218 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 DEFB133Q30KQ1 61 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 C4orf46Q504U0 113 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 EMC4Q5J8M3 183 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 GLYATL3Q5SZD4 288 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM225Q6GV28 225 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 RGS7BPQ6MZT1 257 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 STEAP1BQ6NZ63 245 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SHISA6Q6ZSJ9 500 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF627Q7L945 461 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 KRT77Q7Z794 578 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 TMED4Q7Z7H5 227 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 OR6N1Q8NGY5 312 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 GPR119Q8TDV5 335 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 TNFAIP8L1Q8WVP5 186 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 ASB5Q8WWX0 329 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SLC25A28Q96A46 364 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF578Q96N58 590 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF285Q96NJ3 590 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 LAT2Q9GZY6 243 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 POFUT1Q9H488 388 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 EXO5Q9H790 373 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 LRP12Q9Y561 859 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 WDFY4Q6ZS81 3184 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 IGLV1-36A0A0B4J1U3 117 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 LOC100289279A0A1B0GTE1 492 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 A0A1W2PPC4 97 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 MFSD2BA6NFX1 497 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 FRG2CA6NGY1 282 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 OR6C65A6NJZ3 312 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SLC17A2O00624 439 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 OR6A2O95222 327 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 SPDEFO95238 335 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 CSN2P05814 226 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 MYF5P13349 255 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 PRKACBP22694 351 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 VAMP1P23763 118 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 IL12BP29460 328 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 FAUP35544 74 aaKnown RBP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 LTBRP36941 435 aa6.74□□□□□ -1.33
LIMA1-213ENST00000552720 RPL27P61353 136 aaKnown RBP6.74□□□□□ -1.33
LIMA1-213ENST00000552720 FMODQ06828 376 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms