RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 APOBEC1P41238 236 aaKnown RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 CAPZA2P47755 286 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 FOXA1P55317 472 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 PROK1P58294 105 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 SEC61A1P61619 476 aaKnown RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 SLC35A1P78382 337 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 MRPS25P82663 173 aaKnown RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 ROR2Q01974 943 aaKnown RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 GSTA3Q16772 222 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 DEFB112Q30KQ8 113 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 UNC50Q53HI1 259 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 RUSC1-AS1Q66K80 236 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 NIPAL3Q6P499 406 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 ZCCHC12Q6PEW1 402 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 PAQR6Q6TCH4 344 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 DCDC5Q6ZRR9 648 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 BCDIN3DQ7Z5W3 292 aaKnown RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 PARP8Q8N3A8 854 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 C11orf65Q8NCR3 313 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 LINC01006Q8NI28 216 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF563Q8TA94 476 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF347Q96SE7 839 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 STACQ99469 402 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 NAA11Q9BSU3 229 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 CHIAQ9BZP6 476 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF385DQ9H6B1 395 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 SLC6A13Q9NSD5 602 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 SIRT3Q9NTG7 399 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 ZCCHC3Q9NUD5 404 aaKnown RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 ASIC5Q9NY37 505 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 MRPL15Q9P015 296 aaKnown RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 SEC14L4Q9UDX3 406 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 DHDHQ9UQ10 334 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 TRAPPC4Q9Y296 219 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 INSIG2Q9Y5U4 225 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 SPIN1Q9Y657 262 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 LYSTQ99698 3801 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 TMED7-TICAM2A0A0A6YYA0 188 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 TRAV40A0A0B4J280 105 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 SRRM5B3KS81 715 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 EIF1BO60739 113 aaKnown RBP5.44□□□□□ -1.54
LIMA1-204ENST00000549064 SHOX2O60902 331 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-204ENST00000549064 FOXH1O75593 365 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 CLPXO76031 633 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 SUPT7LO94864 414 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 HLA-HP01893 362 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 RBP1P09455 135 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF35P13682 527 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF12P17014 697 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 MAKP20794 623 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 FRKP42685 505 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-204ENST00000549064 CRYBB2P43320 205 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 PPP5CP53041 499 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 DR1Q01658 176 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 GUCY2DQ02846 1103 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 CEACAM7Q14002 265 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 KPNB1Q14974 876 aaKnown RBP5.44□□□□□ -1.54
LIMA1-204ENST00000549064 OR7A5Q15622 319 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 UAP1Q16222 522 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-204ENST00000549064 C2orf68Q2NKX9 166 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 NOXRED1Q6NXP6 359 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 TMEM65Q6PI78 240 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 BRD3OSQ6XYD6 125 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 Q6ZNX1 250 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 GPRIN3Q6ZVF9 776 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 CYS1Q717R9 158 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 GRINAQ7Z429 371 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 CCDC91Q7Z6B0 441 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 HMGN2P46Q86SG4 172 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 TMEM217Q8N7C4 229 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 OR52E2Q8NGJ4 325 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 OR5D16Q8NGK9 328 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 CLHC1Q8NHS4 586 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 ST7LQ8TDW4 575 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 RAB1CQ92928 201 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 PPCDCQ96CD2 204 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 TIMD4Q96H15 378 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF317Q96PQ6 595 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-204ENST00000549064 ABHD1Q96SE0 405 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF382Q96SR6 550 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 SDF2Q99470 211 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 C1QTNF3Q9BXJ4 246 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 HINT3Q9NQE9 182 aaKnown RBP5.44□□□□□ -1.54
LIMA1-204ENST00000549064 GRHL1Q9NZI5 618 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 SH3BP4Q9P0V3 963 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 TAAR3PQ9P1P4 343 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 TMCO1Q9UM00 188 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 TMED7Q9Y3B3 224 aa5.44□□□□□ -1.54
LIMA1-204ENST00000549064 SIRT4Q9Y6E7 314 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-204ENST00000549064 DYNC2H1Q8NCM8 4307 aaKnown RBP5.43□□□□□ -1.54
LIMA1-204ENST00000549064 PPIAL4EA0A075B759 164 aa5.43□□□□□ -1.54
LIMA1-204ENST00000549064 PPIAL4CA0A0B4J2A2 164 aa5.43□□□□□ -1.54
LIMA1-204ENST00000549064 C5orf63A6NC05 138 aa5.43□□□□□ -1.54
LIMA1-204ENST00000549064 A8MZ25 164 aa5.43□□□□□ -1.54
LIMA1-204ENST00000549064 NPIPB8E9PQR5 432 aa5.43□□□□□ -1.54
LIMA1-204ENST00000549064 PPIAL4DF5H284 164 aa5.43□□□□□ -1.54
LIMA1-204ENST00000549064 ANKRD28O15084 1053 aa5.43□□□□□ -1.54
LIMA1-204ENST00000549064 FCMRO60667 390 aa5.43□□□□□ -1.54
LIMA1-204ENST00000549064 UGT2B17O75795 530 aa5.43□□□□□ -1.54
LIMA1-204ENST00000549064 IGHMP01871 453 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms