RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	PFN4	Q8NHR9	129 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	TMEM239	Q8WW34	195 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	GEMIN6	Q8WXD5	167 aa	Known RBP	6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	HIST1H2AC	Q93077	130 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	CMTM5	Q96DZ9	223 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	SGTB	Q96EQ0	304 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	TPD52L3	Q96J77	140 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	SEPHS2	Q99611	448 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	REG4	Q9BYZ8	158 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	MYLK2	Q9H1R3	596 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	SEC61A2	Q9H9S3	476 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	EFCAB1	Q9HAE3	211 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	C20orf141	Q9NUB4	165 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	B3GNT2	Q9NY97	397 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	GLTP	Q9NZD2	209 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	ZNF224	Q9NZL3	707 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	A4GNT	Q9UNA3	340 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	POFUT2	Q9Y2G5	429 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	MED31	Q9Y3C7	131 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	FKBP7	Q9Y680	259 aa		6.64	□□□□□ -1.35
SNHG1-223	ENST00000545440	IGHV4-30-2	A0A087WSY4	118 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440		A0A096LNT2	108 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440		A0A1W2PRG6	482 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	MCIDAS	D6RGH6	385 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	BLOC1S5-TXNDC5	H3BN57	136 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	CXCR6	O00574	342 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	RAB36	O95755	333 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	BCL10	O95999	233 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	HLA-H	P01893	362 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	OR4A8	P0C604	315 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	NR2C1	P13056	603 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	SLC25A16	P16260	332 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	ZNF14	P17017	642 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	FUT1	P19526	365 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	PRDX6	P30041	224 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	GSK3B	P49841	420 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	PPOX	P50336	477 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	ZNF133	P52736	654 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	PPP2R2B	Q00005	443 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	HGFAC	Q04756	655 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	TOP3A	Q13472	1001 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	TRIM25	Q14258	630 aa	Known RBP	6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	MELK	Q14680	651 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	HIST3H3	Q16695	136 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	MST1L	Q2TV78	715 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	ANKDD1A	Q495B1	522 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	IFI44L	Q53G44	452 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	PRR31	Q5SQ13	230 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	PIWIL3	Q7Z3Z3	882 aa	Known RBP	6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	VTCN1	Q7Z7D3	282 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	ZNF525	Q8N782	197 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	LINC01356	Q8N9X3	169 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	OR10H5	Q8NGA6	315 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	ASB10	Q8WXI3	467 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	FBXO17	Q96EF6	278 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	ZNF75A	Q96N20	296 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	KCTD14	Q9BQ13	255 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	RHNO1	Q9BSD3	238 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	MRPL13	Q9BYD1	178 aa	Known RBP	6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	PLK3	Q9H4B4	646 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	SMURF2	Q9HAU4	748 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	NOX3	Q9HBY0	568 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	MYOZ1	Q9NP98	299 aa	Predicted RBP	6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	SPAG4	Q9NPE6	437 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	INIP	Q9NRY2	104 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	MAN2C1	Q9NTJ4	1040 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	TMEM38B	Q9NVV0	291 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	MAGEL2	Q9UJ55	1249 aa		6.63	□□□□□ -1.35
SNHG1-223	ENST00000545440	JMJD1C	Q15652	2540 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	GMNC	A6NCL1	334 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	VSTM5	A8MXK1	200 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	NDUFS8	O00217	210 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	DHH	O43323	396 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	TLX2	O43763	284 aa	Predicted RBP	6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	MGRN1	O60291	552 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	PIP5K1C	O60331	668 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	SNX3	O60493	162 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	PRSS23	O95084	383 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	FARS2	O95363	451 aa	Known RBP	6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	ZNF682	O95780	498 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	SERPINA1	P01009	418 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	IGHM	P01871	453 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	OR8G3P	P0DMU2	310 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	CD79A	P11912	226 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	IFI30	P13284	250 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	ZNF35	P13682	527 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	ACADS	P16219	412 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	NPR2	P20594	1047 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	NR4A1	P22736	598 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	AQP2	P41181	271 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	PTDSS1	P48651	473 aa	Known RBP	6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	SLC9A3	P48764	834 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	SEC24C	P53992	1094 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	CLRN1	P58418	232 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	RPS23	P62266	143 aa	Known RBP	6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	LOXL1	Q08397	574 aa	Predicted RBP	6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	SNTB2	Q13425	540 aa	Known RBP	6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	DAG1	Q14118	895 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	TRAM2	Q15035	370 aa		6.62	□□□□□ -1.35
SNHG1-223	ENST00000545440	TAF11	Q15544	211 aa		6.62	□□□□□ -1.35

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms