RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 AKR7A3O95154 331 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 CD53P19397 219 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 CHATP28329 748 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 RPS15AP62244 130 aaKnown RBP13.01□□□□□ -0.33
LIMS1-215ENST00000544547 C2orf76Q3KRA6 126 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 MFSD12Q6NUT3 480 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 FAM219AQ8IW50 185 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 CNRIP1Q96F85 164 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-215ENST00000544547 LUZP4Q9P127 313 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 GHRLQ9UBU3 117 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 FOXJ3Q9UPW0 622 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 RHBDD3Q9Y3P4 386 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 MMP24Q9Y5R2 645 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 GVINP1Q7Z2Y8 2422 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 G0S2P27469 103 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 DEFB110Q30KQ9 67 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 GPR157Q5UAW9 335 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 MORN4Q8NDC4 146 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 OR6K3Q8NGY3 331 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 OR5K2Q8NHB8 316 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 OR51B4Q9Y5P0 310 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 PLSCR5A0PG75 271 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 ZNF850A8MQ14 1090 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 RNASEK-C17orf49H0YIS7 233 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 TP53I11O14683 189 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 MEP1BQ16820 701 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 BCL2L10Q9HD36 194 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 ZNF705FA8MVS1 300 aaPredicted RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 MAN2B1O00754 1011 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 PHOX2AO14813 284 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 CRTAPO75718 401 aaPredicted RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 OR2C1O95371 312 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 CA3P07451 260 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 ZNF705DP0CH99 300 aaPredicted RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 ZNF705BP0CI00 300 aaPredicted RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 OMGP23515 440 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 EMP2P54851 167 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 SGCAQ16586 387 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 SLC22A6Q4U2R8 563 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 RNLSQ5VYX0 342 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 KCNK15Q9H427 330 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 STARD5Q9NSY2 213 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 GPR34Q9UPC5 381 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 LOC100289279A0A1B0GTE1 492 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 UMAD1C9J7I0 102 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 SEMA7AO75326 666 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 ZFPL1O95159 310 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 CPN1P15169 458 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 TAS2R31P59538 309 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 ZP1P60852 638 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 CSNK1G2P78368 415 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 SLC16A9Q7RTY1 509 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 MCATQ8IVS2 390 aaKnown RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 OR51Q1Q8NH59 317 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 OR1S1Q8NH92 325 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 NUDCD2Q8WVJ2 157 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 PHYHIPQ92561 330 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 DIO2Q92813 273 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 FAM212BQ9NTI7 297 aaPredicted RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 SLCO1C1Q9NYB5 712 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 DKKL1Q9UK85 242 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 EXOGQ9Y2C4 368 aaKnown RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 PCYT1BQ9Y5K3 369 aaPredicted RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 KPTNQ9Y664 436 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 A0A1W2PS29 197 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 LRP3O75074 770 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 ARG1P05089 322 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 DHRS2Q13268 280 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 HIST2H3PS2Q5TEC6 136 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 SLC30A7Q8NEW0 376 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 OR10D4PQ8NGN7 298 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 UNKLQ9H9P5 680 aaKnown RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 hCG_1809904A0A1W2PP81 198 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 A0A1W2PR64 198 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 A0A1W2PRV1 198 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 ANKRD20A5PA0PJZ0 165 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 TAGLN2P37802 199 aaKnown RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 TRA2BP62995 288 aaKnown RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 HHEXQ03014 270 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 ELAVL1Q15717 326 aaKnown RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 SLC48A1Q6P1K1 146 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 UQCC3Q6UW78 93 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 DND1Q8IYX4 353 aaKnown RBP13□□□□□ -0.33
LIMS1-215ENST00000544547 LYSMD1Q96S90 227 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 HHLA2Q9UM44 414 aa13□□□□□ -0.33
LIMS1-215ENST00000544547 MED19A0JLT2 244 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 SYT7O43581 403 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 IL33O95760 270 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 TMIGD3P0DMS9 266 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 ZXDCQ2QGD7 858 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 IAH1Q2TAA2 248 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 ELFN2Q5R3F8 820 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 LPCAT3Q6P1A2 487 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 GALNT16Q8N428 558 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 ALG14Q96F25 216 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 SDF2Q99470 211 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 URM1Q9BTM9 101 aaKnown RBP12.99□□□□□ -0.33
LIMS1-215ENST00000544547 NELFAQ9H3P2 528 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 UQCC1Q9NVA1 299 aa12.99□□□□□ -0.33
LIMS1-215ENST00000544547 LRFN1Q9P244 771 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms