RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ADAMTS16Q8TE57 1224 aa15□□□□□ -0.01
CLSTN3-214ENST00000542663 ASB10Q8WXI3 467 aa15□□□□□ -0.01
CLSTN3-214ENST00000542663 CENPHQ9H3R5 247 aa15□□□□□ -0.01
CLSTN3-214ENST00000542663 SIAEQ9HAT2 523 aa15□□□□□ -0.01
CLSTN3-214ENST00000542663 MSL2Q9HCI7 577 aa15□□□□□ -0.01
CLSTN3-214ENST00000542663 CYSLTR2Q9NS75 346 aa15□□□□□ -0.01
CLSTN3-214ENST00000542663 ZDHHC8Q9ULC8 765 aa15□□□□□ -0.01
CLSTN3-214ENST00000542663 IGKV1D-43A0A0B4J1Z2 117 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 F5H0A9 414 aaPredicted RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 TRMUO75648 421 aaKnown RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 SLC2A10O95528 541 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 NGFP01138 241 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 F13BP05160 661 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 IGHV4-38-2P0DP08 117 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 PPIBP23284 216 aaKnown RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 MRPL19P49406 292 aaKnown RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 UGT2B15P54855 530 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 PCBP3P57721 371 aaKnown RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 MRPS34P82930 218 aaKnown RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 PSG4Q00888 419 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 RPL18Q07020 188 aaKnown RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 WDR93Q6P2C0 686 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 BLOC1S3Q6QNY0 202 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 JAZF1Q86VZ6 243 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 HIPK4Q8NE63 616 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 NMD3Q96D46 503 aaKnown RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 SIGLEC11Q96RL6 698 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 MRI1Q9BV20 369 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 CCNB1IP1Q9NPC3 277 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 MEPEQ9NQ76 525 aaPredicted RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 TMEM106BQ9NUM4 274 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 CGGBP1Q9UFW8 167 aaPredicted RBP14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 SLC7A7Q9UM01 511 aa14.99□□□□□ -0.01
CLSTN3-214ENST00000542663 IGHV3OR16-10A0A075B7F0 116 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 CENPBD1B2RD01 187 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 BLOC1S5-TXNDC5H3BN57 136 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 ICMTO60725 284 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 OPN1SWP03999 348 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 UMPSP11172 480 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 ACADSP16219 412 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 OMGP23515 440 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 CD80P33681 288 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 LIPAP38571 399 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 PPP1CBP62140 327 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 TNFAIP6P98066 277 aaPredicted RBP14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 PAX8Q06710 450 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 TMEM155Q4W5P6 130 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 C9orf139Q6ZV77 190 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 NANOGNBQ7Z5D8 188 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 LRRC28Q86X40 367 aaPredicted RBP14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 PTOV1Q86YD1 416 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 KLHL36Q8N4N3 616 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 SPICQ8N5J4 248 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 ZNF283Q8N7M2 679 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 ABHD4Q8TB40 342 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 TMIGD2Q96BF3 282 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 SPDL1Q96EA4 605 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 DIRC2Q96SL1 478 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 PRSS27Q9BQR3 290 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 MS4A7Q9GZW8 240 aaPredicted RBP14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 EIF3KQ9UBQ5 218 aaKnown RBP14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 MMP24Q9Y5R2 645 aa14.98□□□□□ -0.01
CLSTN3-214ENST00000542663 TMEM120BA0PK00 339 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 HIST1H2ABP04908 130 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 GDI2P50395 445 aaKnown RBP14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 ERVK-25P63136 954 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 PAX2Q02962 417 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 FMODQ06828 376 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 CDK5R2Q13319 367 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 ZMYND11Q15326 602 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 EPGNQ6UW88 154 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 HIST3H2AQ7L7L0 130 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 PARP8Q8N3A8 854 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 VANGL1Q8TAA9 524 aaPredicted RBP14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 HIST1H2ACQ93077 130 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 SLC19A3Q9BZV2 496 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 WNT5BQ9H1J7 359 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 KCNN2Q9H2S1 579 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 PDP1Q9P0J1 537 aaPredicted RBP14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 ANGPT4Q9Y264 503 aa14.97□□□□□ -0.01
CLSTN3-214ENST00000542663 MDFIC2A0A1B0GVS7 189 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 A0A1W2PRG6 482 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 TRAPPC13A5PLN9 417 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 MCIDASD6RGH6 385 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 H3BSA7 217 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 GPANK1O95872 356 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 PLATP00750 562 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 BTG1P62324 171 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 PSG7Q13046 419 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 MTX3Q5HYI7 312 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 ARMC4Q5T2S8 1044 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 SPATC1Q76KD6 591 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 C1orf174Q8IYL3 243 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 OR52E2Q8NGJ4 325 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 WFDC12Q8WWY7 111 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 HDAC2Q92769 488 aaKnown RBP14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 MPP4Q96JB8 637 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 CPPED1Q9BRF8 314 aaPredicted RBP14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 OR2H1Q9GZK4 316 aa14.96□□□□□ -0.01
CLSTN3-214ENST00000542663 PCDHAC1Q9H158 963 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms