RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	OR7E24	Q6IFN5	339 aa		13.31	□□□□□ -0.28
DDX55-209	ENST00000542286	OGFOD3	Q6PK18	319 aa		13.31	□□□□□ -0.28
DDX55-209	ENST00000542286	ZNF440	Q8IYI8	595 aa		13.31	□□□□□ -0.28
DDX55-209	ENST00000542286	WDR89	Q96FK6	387 aa	Predicted RBP	13.31	□□□□□ -0.28
DDX55-209	ENST00000542286	C20orf85	Q9H1P6	137 aa		13.31	□□□□□ -0.28
DDX55-209	ENST00000542286	TCF7L1	Q9HCS4	588 aa		13.31	□□□□□ -0.28
DDX55-209	ENST00000542286	HPF1	Q9NWY4	346 aa		13.31	□□□□□ -0.28
DDX55-209	ENST00000542286		V9GY05	133 aa		13.31	□□□□□ -0.28
DDX55-209	ENST00000542286	PEX14	O75381	377 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	CDK2	P24941	298 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	DCTD	P32321	178 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	KIR3DL2	P43630	455 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	INSM1	Q01101	510 aa	Predicted RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	BIK	Q13323	160 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	OVCH1	Q7RTY7	1134 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	CLRN3	Q8NCR9	226 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	OR5M1	Q8NGP8	315 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	OR2I1P	Q8NGU4	316 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	OR2G2	Q8NGZ5	317 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	ZNF417	Q8TAU3	575 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	ZNF587	Q96SQ5	575 aa	Predicted RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	LAT2	Q9GZY6	243 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	TMEM185B	Q9H7F4	350 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	ELOVL3	Q9HB03	270 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	ABRACL	Q9P1F3	81 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	FRY	Q5TBA9	3013 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	PHF3	Q92576	2039 aa	Known RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	TMED7-TICAM2	A0A0A6YYA0	188 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	GATB	O75879	557 aa	Known RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	LDOC1	O95751	146 aa	Predicted RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	GUSB	P08236	651 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	ALOX5AP	P20292	161 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	NFYA	P23511	347 aa	Predicted RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	MMP15	P51511	669 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	SMAD4	Q13485	552 aa	Known RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	KLF9	Q13886	244 aa	Predicted RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	WDR38	Q5JTN6	314 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	SEZ6L2	Q6UXD5	910 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	ZNF574	Q6ZN55	896 aa	Predicted RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	CCDC74A	Q96AQ1	378 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	ZNF501	Q96CX3	271 aa	Predicted RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	MRPL22	Q9NWU5	206 aa	Known RBP	13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	MED11	Q9P086	117 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	COPS7A	Q9UBW8	275 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	TMED7	Q9Y3B3	224 aa		13.3	□□□□□ -0.28
DDX55-209	ENST00000542286	LOC101059948	A0A1B0GTJ6	334 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	OR4C45	A6NMZ5	311 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286		H3BML4	177 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	DNASE2	O00115	360 aa	Predicted RBP	13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	AIP	O00170	330 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	DUX1	O43812	170 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	MFGE8	Q08431	387 aa	Predicted RBP	13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	UBE2NL	Q5JXB2	153 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	PWWP2B	Q6NUJ5	590 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	MAMSTR	Q6ZN01	415 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	BIVM	Q86UB2	503 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	LINC00346	Q8IVM7	164 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	OR1N1	Q8NGS0	311 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	STT3B	Q8TCJ2	826 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	INTS14	Q96SY0	518 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	ZCCHC4	Q9H5U6	513 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	FBXL3	Q9UKT7	428 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	KLF2	Q9Y5W3	355 aa	Predicted RBP	13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	ANXA2P2	A6NMY6	339 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	SOX1	O00570	391 aa	Predicted RBP	13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	BCAT2	O15382	392 aa	Predicted RBP	13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	KDM4B	O94953	1096 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	GP1BB	P13224	206 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	CCKBR	P32239	447 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	RPL35	P42766	123 aa	Known RBP	13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	VEGFC	P49767	419 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	AKR1D1	P51857	326 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	FLI1	Q01543	452 aa	Predicted RBP	13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	GUCA2A	Q02747	115 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286		Q499Y3	187 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	EEF1A1P5	Q5VTE0	462 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	SLC22A10	Q63ZE4	541 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	CORO6	Q6QEF8	472 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	COX15	Q7KZN9	410 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	SLC29A4	Q7RTT9	530 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	UCK1	Q9HA47	277 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	MED29	Q9NX70	200 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	PIPOX	Q9P0Z9	390 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	MGAT4C	Q9UBM8	478 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	EPHA6	Q9UF33	1036 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	GPR160	Q9UJ42	338 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	CAMK2A	Q9UQM7	478 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	MMACHC	Q9Y4U1	282 aa		13.29	□□□□□ -0.28
DDX55-209	ENST00000542286	RALGAPA1	Q6GYQ0	2036 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	IGKV1D-43	A0A0B4J1Z2	117 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	BLACE	A4D250	179 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	MCRIP1	C9JLW8	97 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	XKRY	O14609	159 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	REN	P00797	406 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	PTH2R	P49190	550 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	SLC25A1	P53007	311 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	LCN10	Q6JVE6	187 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	PLXDC1	Q8IUK5	500 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	D2HGDH	Q8N465	521 aa		13.28	□□□□□ -0.28
DDX55-209	ENST00000542286	PLPP7	Q8NBV4	271 aa		13.28	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms