RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 BIDP55957 195 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 SLC17A1Q14916 467 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 FAM219AQ8IW50 185 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 OR4S1Q8NGB4 309 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 MAFAQ8NHW3 353 aaPredicted RBP15.17■□□□□ 0.02
USP28-208ENST00000540438 SLC25A44Q96H78 314 aaPredicted RBP15.17■□□□□ 0.02
USP28-208ENST00000540438 ZNF578Q96N58 590 aaPredicted RBP15.17■□□□□ 0.02
USP28-208ENST00000540438 STMN3Q9NZ72 180 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 KLHL13Q9P2N7 655 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 NUBP2Q9Y5Y2 271 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 RP1L1Q8IWN7 2480 aaPredicted RBP15.17■□□□□ 0.02
USP28-208ENST00000540438 A0A1W2PPL8 197 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 POLR2HP52434 150 aaKnown RBP15.17■□□□□ 0.02
USP28-208ENST00000540438 TEX19Q8NA77 164 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 MGAT4CQ9UBM8 478 aa15.17■□□□□ 0.02
USP28-208ENST00000540438 CACNA1GO43497 2377 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 CEP192Q8TEP8 1941 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 A8MVM7 634 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 NPIPA5E9PKD4 350 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 MS4A18H0YCH9 400 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 RGS11O94810 467 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 CD3DP04234 171 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 ZNF28P17035 718 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 CD53P19397 219 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 PSMB1P20618 241 aaKnown RBP15.16■□□□□ 0.02
USP28-208ENST00000540438 MS4A18Q3C1V0 323 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 SLC26A10Q8NG04 563 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 OR51S1Q8NGJ8 323 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 NPRL2Q8WTW4 380 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 DCBLD2Q96PD2 775 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 GINS4Q9BRT9 223 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 CRB3Q9BUF7 120 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 EPHA6Q9UF33 1036 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 NPIPA1Q9UND3 350 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 ING4Q9UNL4 249 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 PDCD5O14737 125 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 TRAPPC2P0DI81 140 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 TRAPPC2BP0DI82 140 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 ANXA3P12429 323 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 GTF2F2P13984 249 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 SLC25A1P53007 311 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 FGD2Q7Z6J4 655 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 FTMTQ8N4E7 242 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 NAXEQ8NCW5 288 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 ADAMTS14Q8WXS8 1223 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 METTL7AQ9H8H3 244 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 MRPL39Q9NYK5 338 aaKnown RBP15.16■□□□□ 0.02
USP28-208ENST00000540438 MRPS18BQ9Y676 258 aaKnown RBP15.16■□□□□ 0.02
USP28-208ENST00000540438 ADAMTS9Q9P2N4 1935 aa15.16■□□□□ 0.02
USP28-208ENST00000540438 GAAP10253 952 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 BLVRAP53004 296 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 EMP2P54851 167 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 PUDPQ08623 228 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 COL13A1Q5TAT6 717 aaPredicted RBP15.15■□□□□ 0.02
USP28-208ENST00000540438 ZNF782Q6ZMW2 699 aaPredicted RBP15.15■□□□□ 0.02
USP28-208ENST00000540438 NLRC3Q7RTR2 1065 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 ANKRD37Q7Z713 158 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 LUZP2Q86TE4 346 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 PLCZ1Q86YW0 608 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 SLC41A2Q96JW4 573 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 OR5B2Q96R09 309 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 OR8B4Q96RC9 309 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 PELOQ9BRX2 385 aaKnown RBP15.15■□□□□ 0.02
USP28-208ENST00000540438 DHDHQ9UQ10 334 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 TMEM269A0A1B0GVZ9 245 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 TOMM20Q15388 145 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 SGCBQ16585 318 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 LGALSLQ3ZCW2 172 aaPredicted RBP15.15■□□□□ 0.02
USP28-208ENST00000540438 CD163Q86VB7 1156 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 MEIOBQ8N635 442 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 OR4C16Q8NGL9 310 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 FAM3DQ96BQ1 224 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 TMEM138Q9NPI0 162 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 MOKQ9UQ07 419 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 POLR1DQ9Y2S0 133 aa15.15■□□□□ 0.02
USP28-208ENST00000540438 IGLV1-36A0A0B4J1U3 117 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 ZNF823P16415 610 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 PTBP1P26599 531 aaKnown RBP eCLIP15.14■□□□□ 0.01
USP28-208ENST00000540438 SCGB2B2Q4G0G5 96 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 LIN54Q6MZP7 749 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 SLC18B1Q6NT16 456 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 BTN2A1Q7KYR7 527 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.14■□□□□ 0.01
USP28-208ENST00000540438 ZNF248Q8NDW4 579 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 OR1J4Q8NGS1 313 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 OR13C3Q8NGS6 347 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 TXNIPQ9H3M7 391 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 PTGES2Q9H7Z7 377 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 CCL4P13236 92 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 TSPAN5P62079 268 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 CHMP1BQ7LBR1 199 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 GRINAQ7Z429 371 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 ZNF227Q86WZ6 799 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 HLA-CQ95604 372 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 FGGYQ96C11 551 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 HAVCR1Q96D42 359 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 GTPBP2Q9BX10 602 aaKnown RBP15.14■□□□□ 0.01
USP28-208ENST00000540438 NCOA6Q14686 2063 aaPredicted RBP15.14■□□□□ 0.01
USP28-208ENST00000540438 A0A1B0GVI7 797 aa15.14■□□□□ 0.01
USP28-208ENST00000540438 TMEM235A6NFC5 223 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms